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The map label for this gene is hydB [H]

Identifier: 126174114

GI number: 126174114

Start: 2188295

End: 2189998

Strand: Reverse

Name: hydB [H]

Synonym: Sbal_1888

Alternate gene names: 126174114

Gene position: 2189998-2188295 (Counterclockwise)

Preceding gene: 126174115

Following gene: 126174113

Centisome position: 42.71

GC content: 49.47

Gene sequence:

>1704_bases
ATGAGCAAGCGCGTTGTTATCGACCCTATCACACGTATCGAGGGTCACTTACGTATCGAAGTTGAAGTTGATGAAAATAA
CGTCATCAGCAAGGCTTGGTCATCCTCCACACTCTGGCGCGGTATTGAAGTCATTCTCAAGGGCCGTACGCCTATGGATG
TTGGCCTTATTGTGCAACGTATCTGTGGTGTCTGTACCTATTCCCACTACCGCTGCGGCACTGAAGCGGTTGAGAACGCT
CTGGGAATTCAAATTCCGTTGAACGCAAGATACTTGCGTTCATTGATGCAAACCTCTTTATACATGCATGACCATATTGT
GCATTTCTATCATCTACACGGTCTTGATTGGGTGGATGTGGTGTCTGCACTGAGCGCCGATCCGGCCAAAGCTGCACAAG
TTGCGCTGCAATACACAGACAAGCCCATAGCCGCGGGTGAAGGTGATTTAAGAGCCGTGCAAGAAAGAGTCAAAGGCTTT
GTCGAAACCGGTAAATTAGGCCCCTTCGCCAACGCTTATTGGGGCAATGGCACCTATAAATTTACTCCAGAGCAAAACCT
TATCGCGCTGTCTCACTACCTTAAAGCACTTGAAGTACAACGTGTTGCGGCGGAAATGCTGGCCATCTTTGGCGGTAAAT
ATCCACATCCACAATCCGTTGTTGTCGGTGGTGTGACGTCGGTGCGTGACATGTTAAGCCCTGCTCGCCTGCAGGAATGG
AAGCAAAAACATGCGACCGTGACTGACTTTATCCTGCGTGCTTATCAAGCGGATATCGTGATGGCGGCCGAAGCCTTTGG
TACTGAGCCAAGTGTGCTGGGCGGCGTGAATGTGAAAAACTTCATGGCGACCGATGACTTTGTGTTAGCCAATGGCGAAT
ACATGTTCAATCAAGGCGTGATCATGAACGGCGACCTTGCCGGTGTCAGCGATATAAACCCAGATCTGATTGCTGAAGAC
GTTAGCCATGCTTGGTATAGCGCCGATGCGCCGCAGCATCCCTATGACGGTACAACGATTCCTAATTACACTGGTTTTGT
TGAACGCGATACCGTCTACGGCAAGCTGCCAACGCTGGATGGTGATGGCAAATACTCTTGGGTGAAATCCCCCCGTTATC
AAGGCGAACCTGTTGAAGTGGGTCCATTAGCCTGCCTATTGGTGAGTTATGCCCGTGGTAACAAAGTGGTTGTGGATTCA
GTCAATGCCTTGCTCGCTCGCACTGGCTTACCCGTTGCCGCCCTATTTACCACTTTAGGTCGCACCGCAGCCCGTATGTT
ACAGACAGTTATCGTCGCCCAAGAAGGATTAAAAACCTTCGATGCGCTGCTGACGAATATCCAGTCTGATGAATCAACTT
ATGTGAAACCCAATATCGACCCGAGCAAAGAGTACATAGGTCACGCCATGATTGAGGCGCCACGCGGCATGTTAAGCCAC
TGGATCCGCATTAAAAATGGAGTGATAGAGAACTATCAAGCCGTAGTACCGACGACCTGGAACGCAGGACCTGTGGATGC
CAACGGTAAAATGGGTCCCTATGAAGCCTCTTTAATTGGCTTGAAACTGGAAGATCCTACTAAGCCCCTTGAGGTGATAC
GTATTATTCACTCATTTGACCCTTGCATGGCGTGTTCTGTACACGTGATGGATTTTAAAGGTCAGGCATTGAGCGAGTTC
CGTGTCAGTCCCAATGGTCAATAA

Upstream 100 bases:

>100_bases
CGCAGATACTATTGGTGCGGTGATTTTAGGCGCGACTGTGGTGGGCATTGGAGCCCATGCCGTTGCCAGTATTTTTGCCA
AACCGCTGGAGGAATAACCC

Downstream 100 bases:

>100_bases
TCGAGGGAGGGAACGCAAAATGAACCATTCTGCAACCCGCATTCGGACACTGGTTTTTAGTCCGGCAATACGGATTTTCC
ACTGGCTCAGGGCACTATCA

Product: nickel-dependent hydrogenase large subunit

Products: NA

Alternate protein names: Hydrogen:quinone oxidoreductase; Membrane-bound hydrogenase large subunit [H]

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSKRVVIDPITRIEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRCGTEAVENA
LGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSALSADPAKAAQVALQYTDKPIAAGEGDLRAVQERVKGF
VETGKLGPFANAYWGNGTYKFTPEQNLIALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEW
KQKHATVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAGVSDINPDLIAED
VSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWVKSPRYQGEPVEVGPLACLLVSYARGNKVVVDS
VNALLARTGLPVAALFTTLGRTAARMLQTVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSH
WIRIKNGVIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVHVMDFKGQALSEF
RVSPNGQ

Sequences:

>Translated_567_residues
MSKRVVIDPITRIEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRCGTEAVENA
LGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSALSADPAKAAQVALQYTDKPIAAGEGDLRAVQERVKGF
VETGKLGPFANAYWGNGTYKFTPEQNLIALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEW
KQKHATVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAGVSDINPDLIAED
VSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWVKSPRYQGEPVEVGPLACLLVSYARGNKVVVDS
VNALLARTGLPVAALFTTLGRTAARMLQTVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSH
WIRIKNGVIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVHVMDFKGQALSEF
RVSPNGQ
>Mature_566_residues
SKRVVIDPITRIEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRCGTEAVENAL
GIQIPLNARYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSALSADPAKAAQVALQYTDKPIAAGEGDLRAVQERVKGFV
ETGKLGPFANAYWGNGTYKFTPEQNLIALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEWK
QKHATVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAGVSDINPDLIAEDV
SHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWVKSPRYQGEPVEVGPLACLLVSYARGNKVVVDSV
NALLARTGLPVAALFTTLGRTAARMLQTVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSHW
IRIKNGVIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVHVMDFKGQALSEFR
VSPNGQ

Specific function: This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions [H]

COG id: COG0374

COG function: function code C; Ni,Fe-hydrogenase I large subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family [H]

Homologues:

Organism=Escherichia coli, GI1789368, Length=583, Percent_Identity=45.4545454545455, Blast_Score=494, Evalue=1e-141,
Organism=Escherichia coli, GI1787207, Length=585, Percent_Identity=40.6837606837607, Blast_Score=419, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001501
- InterPro:   IPR018194 [H]

Pfam domain/function: PF00374 NiFeSe_Hases [H]

EC number: =1.12.5.1 [H]

Molecular weight: Translated: 62252; Mature: 62121

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00507 NI_HGENASE_L_1 ; PS00508 NI_HGENASE_L_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRVVIDPITRIEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQR
CCCCEEECCHHHCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHH
ICGVCTYSHYRCGTEAVENALGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLHGLDWVDV
HHHHHCCCHHCCCHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHEEEHEECCCCHHHH
VSALSADPAKAAQVALQYTDKPIAAGEGDLRAVQERVKGFVETGKLGPFANAYWGNGTYK
HHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEE
FTPEQNLIALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEW
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHCHHHHHHH
KQKHATVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGV
HHHHCHHHHHHHHHHHHHHEEEHHHCCCCCCEECCCCHHHEECCCCEEEECCCEEECCCE
IMNGDLAGVSDINPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLD
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCC
GDGKYSWVKSPRYQGEPVEVGPLACLLVSYARGNKVVVDSVNALLARTGLPVAALFTTLG
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCHHHHHHHHH
RTAARMLQTVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHH
WIRIKNGVIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFD
HHHHHCCHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC
PCMACSVHVMDFKGQALSEFRVSPNGQ
CHHEEEEEEEECCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SKRVVIDPITRIEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQR
CCCEEECCHHHCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHH
ICGVCTYSHYRCGTEAVENALGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLHGLDWVDV
HHHHHCCCHHCCCHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHEEEHEECCCCHHHH
VSALSADPAKAAQVALQYTDKPIAAGEGDLRAVQERVKGFVETGKLGPFANAYWGNGTYK
HHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEE
FTPEQNLIALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEW
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHCHHHHHHH
KQKHATVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGV
HHHHCHHHHHHHHHHHHHHEEEHHHCCCCCCEECCCCHHHEECCCCEEEECCCEEECCCE
IMNGDLAGVSDINPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLD
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCC
GDGKYSWVKSPRYQGEPVEVGPLACLLVSYARGNKVVVDSVNALLARTGLPVAALFTTLG
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCHHHHHHHHH
RTAARMLQTVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHH
WIRIKNGVIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFD
HHHHHCCHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC
PCMACSVHVMDFKGQALSEFRVSPNGQ
CHHEEEEEEEECCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1587288; 8319698; 14500908 [H]