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The map label for this gene is hypD2 [H]

Identifier: 126174107

GI number: 126174107

Start: 2180132

End: 2181271

Strand: Reverse

Name: hypD2 [H]

Synonym: Sbal_1881

Alternate gene names: 126174107

Gene position: 2181271-2180132 (Counterclockwise)

Preceding gene: 126174108

Following gene: 126174106

Centisome position: 42.54

GC content: 50.09

Gene sequence:

>1140_bases
ATGCTTGAACTAAAACACCTCTATCAAGGCTTTCGCGATCCCCAAACGATTGCCAATTTAGCGCGGGATATTCAGGTAAC
CGCTAAATTGGTTAAGCAACCAATCAATATCATGGAAGTCTGTGGCGGCCATACCCACACTATTATGAAATACGGCTTGC
TGGATTTACTGCCTGATAATATTGAGTTTATCCACGGTCCAGGTTGTCCTGTGTGCATTATGCCGAAAGAGCGCATTGAC
CAAGCGGCGGCGCTAGCCTCCCAAGAGAATGTCATCTTAGTGACGCTAGGCGATATGATCCGTGTGCCCGGTTCTAAGGG
TTCCTTAGCCAGTTTTAGGGCGAAAGGCTGCGATATTCGGCCGATTTATGATCCCTTAGATACGCTCAAAATTGCCCGCG
ATAATCCCGATAAAACCGTGGTGTTTTTCGCCATTGGCTTTGAAACCTCAACCCCAATGACAGCAATTTTATTGCAGCTG
GCCGAGCACGAAAAACTCGAAAATCTGTTATTCCATATTAATCATGTATTAGTGCCGCCCGCTATTGATGCCGTGATGCA
CGACCCGAAAGCCAGAGTGAATGCCTTTATTGGCCCCGCCCATGTGAGCGTGATCAGCGGCGCCAAAATCTATCGCAGCA
CAGTCGAAAACTATGGTACGCCCGTGGTTGTCGCAGGATTTGAACCCGTTGATGTGATGGAGTCGATTTTACGGATTGTG
CGCCAAAAAGCCGCGGGCAAAGCGGAGCTCGATATCCAATACAGCCGTGCGGTATCGGAAGACGGTAACCTCACGGCGCA
GGCCAAAGTGAATCAATTCTTTAATATCAGACCGCAATTTCGCTGGCGCGGCCTCGGTCCTATCCCCAATTCAGCGCTGC
AGCTCAAACCAGAATATGCCCACAGGGACGCCGAACTGCGCTTTAAAGACCGCCTACCTGTGAAAGAAATTGACGATCAT
AAAGCCTGTCAGTGTGGCGACATTCTTCGCGGGCTTGCTAAACCAAAGGACTGTAAAGTTTTTGGCCGCGGCTGCAATCC
CGAAACGCCCTTAGGCAGCTGCATGGTCAGCTCCGAAGGCGCTTGCAACGCCTATTACCGCTATCAAGGTATCGATATCA
AGGAGCCACATCATGGCTGA

Upstream 100 bases:

>100_bases
AATCGTCACTAAACTCGAAAACGAAGCCATACACTGACCATTAACAGTGCAAGATTGAGTAGCAAGGCGCGCACCCTATC
AAGTGCACCGAGGAAAGAGC

Downstream 100 bases:

>100_bases
TACGCTAAAAGATAAATCCATTCAGCTCAGCCACGGCGGTGGCGGCAAAGAAATGAATAAACTGATCCGTGATCTGTTTT
TTGCCGAGTTTGATAATCCA

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLELKHLYQGFRDPQTIANLARDIQVTAKLVKQPINIMEVCGGHTHTIMKYGLLDLLPDNIEFIHGPGCPVCIMPKERID
QAAALASQENVILVTLGDMIRVPGSKGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKTVVFFAIGFETSTPMTAILLQL
AEHEKLENLLFHINHVLVPPAIDAVMHDPKARVNAFIGPAHVSVISGAKIYRSTVENYGTPVVVAGFEPVDVMESILRIV
RQKAAGKAELDIQYSRAVSEDGNLTAQAKVNQFFNIRPQFRWRGLGPIPNSALQLKPEYAHRDAELRFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDIKEPHHG

Sequences:

>Translated_379_residues
MLELKHLYQGFRDPQTIANLARDIQVTAKLVKQPINIMEVCGGHTHTIMKYGLLDLLPDNIEFIHGPGCPVCIMPKERID
QAAALASQENVILVTLGDMIRVPGSKGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKTVVFFAIGFETSTPMTAILLQL
AEHEKLENLLFHINHVLVPPAIDAVMHDPKARVNAFIGPAHVSVISGAKIYRSTVENYGTPVVVAGFEPVDVMESILRIV
RQKAAGKAELDIQYSRAVSEDGNLTAQAKVNQFFNIRPQFRWRGLGPIPNSALQLKPEYAHRDAELRFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDIKEPHHG
>Mature_379_residues
MLELKHLYQGFRDPQTIANLARDIQVTAKLVKQPINIMEVCGGHTHTIMKYGLLDLLPDNIEFIHGPGCPVCIMPKERID
QAAALASQENVILVTLGDMIRVPGSKGSLASFRAKGCDIRPIYDPLDTLKIARDNPDKTVVFFAIGFETSTPMTAILLQL
AEHEKLENLLFHINHVLVPPAIDAVMHDPKARVNAFIGPAHVSVISGAKIYRSTVENYGTPVVVAGFEPVDVMESILRIV
RQKAAGKAELDIQYSRAVSEDGNLTAQAKVNQFFNIRPQFRWRGLGPIPNSALQLKPEYAHRDAELRFKDRLPVKEIDDH
KACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEGACNAYYRYQGIDIKEPHHG

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=363, Percent_Identity=43.5261707988981, Blast_Score=340, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41921; Mature: 41921

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELKHLYQGFRDPQTIANLARDIQVTAKLVKQPINIMEVCGGHTHTIMKYGLLDLLPDN
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCC
IEFIHGPGCPVCIMPKERIDQAAALASQENVILVTLGDMIRVPGSKGSLASFRAKGCDIR
CCEEECCCCCEEECCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHHCCCCCC
PIYDPLDTLKIARDNPDKTVVFFAIGFETSTPMTAILLQLAEHEKLENLLFHINHVLVPP
CCCCCHHHHEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
AIDAVMHDPKARVNAFIGPAHVSVISGAKIYRSTVENYGTPVVVAGFEPVDVMESILRIV
HHHHHHCCCHHHHHEEECHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
RQKAAGKAELDIQYSRAVSEDGNLTAQAKVNQFFNIRPQFRWRGLGPIPNSALQLKPEYA
HHHCCCCEEEEEEEHHHCCCCCCEEEEEEHHHHHCCCCCEEECCCCCCCCCCEEECHHHH
HRDAELRFKDRLPVKEIDDHKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEG
CCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYQGIDIKEPHHG
CCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLELKHLYQGFRDPQTIANLARDIQVTAKLVKQPINIMEVCGGHTHTIMKYGLLDLLPDN
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCC
IEFIHGPGCPVCIMPKERIDQAAALASQENVILVTLGDMIRVPGSKGSLASFRAKGCDIR
CCEEECCCCCEEECCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHHCCCCCC
PIYDPLDTLKIARDNPDKTVVFFAIGFETSTPMTAILLQLAEHEKLENLLFHINHVLVPP
CCCCCHHHHEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
AIDAVMHDPKARVNAFIGPAHVSVISGAKIYRSTVENYGTPVVVAGFEPVDVMESILRIV
HHHHHHCCCHHHHHEEECHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
RQKAAGKAELDIQYSRAVSEDGNLTAQAKVNQFFNIRPQFRWRGLGPIPNSALQLKPEYA
HHHCCCCEEEEEEEHHHCCCCCCEEEEEEHHHHHCCCCCEEECCCCCCCCCCEEECHHHH
HRDAELRFKDRLPVKEIDDHKACQCGDILRGLAKPKDCKVFGRGCNPETPLGSCMVSSEG
CCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYQGIDIKEPHHG
CCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]