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The map label for this gene is ykfC [H]

Identifier: 126174067

GI number: 126174067

Start: 2138200

End: 2139546

Strand: Direct

Name: ykfC [H]

Synonym: Sbal_1841

Alternate gene names: 126174067

Gene position: 2138200-2139546 (Clockwise)

Preceding gene: 126174062

Following gene: 126174068

Centisome position: 41.7

GC content: 46.99

Gene sequence:

>1347_bases
TTGTCAAACTTGTCGATACCCACTACGTCGCCAGACGATTACTATCGGCAGCGTATTGATATGCAACCGGCCTTCAACAG
CGATTTATTCCAACAACTACTCGAACCTGAAAATCTACACCGAGCTTGGCGTCAAGTTAAAGCCAATAAAGGCGCGGCTG
GCATCGATGGCATGACTATCGAAGCCTTCCCGCTTTGGATGCAACAAGGCGGTTGGCAACGGTGTAAATCTCTACTGGAA
CGAGGTGAATATAACCCTTCAGCAGTCAGACGCGTAGAGATCGACAAACCCGATGGCGGTAAACGCAAACTGGGTATCCC
TAACGTCATTGATCGTGTGATACAGCAAGCTATTGCTCAAATTCTCACGCCGTTGTTTGACCCTTTCTTCTCGGCTAATA
GCTTCGGCTTTAGACCGAATAGGAATGCCAAACAAGCGGTCTTGCAAGTCAGAGATATCATCAAACAGAAGCGCAAATTT
GCCGTCGATGTTGATCTGTCCAAGTTCTTTGATCGAGTAAATCACGACCTGTTGATGACTCAATTGAGGATCAAGGTACA
GGATAAGCGTCTGCTGGCGCTTATTGGTAAATACCTGCGAGCTGGTGTGACGGTCAACGACCAATTTGAAGCAAGCTTCG
AAGGCGTGCCTCAAGGCGGCCCACTCTCGCCATTACTCTCTAACATTATGCTGGATAGTCTTGATAAAGAGCTGGAAAGC
CGAGGGCACAAATTCGCCCGCTACGCGGACGACTTTATCATTTTGGTAAAGTCTATTCGAGCGGGAGAGCGGGTACTCAA
GAGTATTACTCGCTACCTTGCCACTAAGCTAAAACTGGTTGTTAATGAACAGAAAAGCCAAGTGGTAGAGGTAGGTCAAA
GCAAGTTCCTCGGTTTTACCTTTAACCGCGGGAAGATCCAGTGGCATGCTAAAACATTACACATTTTTAAACAAAAGATG
AAACGCCTGACGAACCGAAATTGGGGCGTTAGCATGGGATATCAATTGTTTAAAGTACGGCAATACATGCAAGGCTGGAT
CAACTACTTTGGCATAGCCAACGCTTATCAAGGGTGTGTCGATTTAGACCATTGGATCCGTCGTCGCGTACGTATGTGCT
ACTGGCGTCAGTGGCGAAAACCACGGACTAAGGTGCAGAATTTACTTAAGCGTGGCGTCAGGATCCAAGCCGCTGTTGGT
TGTGGGATCACAAGTAAAGGTCCATGGCGAAGTTCGAAAACACCCGGGATACAGCAAGCGCTGAGTAATGACTATCTTAA
GAAAGCAGGTTTATGTTCACTAAGAGATGGATGGATCGCAGTTCATTACCCTAACCAGAAAGTTTAG

Upstream 100 bases:

>100_bases
ATGTGATTAAGCAGAAGTCAGCAGACGGCATAGTAGCCCAACGCCCATCGTAATGGTTGGGATATGGTGAAGGCCTGAAC
ATTTAGAAGAAGGAGGAGTC

Downstream 100 bases:

>100_bases
GTTAGGCGTTCTAAATGAACCGCCCTGTGCGGAGCCGCATGCAGGGTGGTGTGGGGGCTGGAGGCTAGATACCTCCGGCT
ACCCGATTGCAGCACGTCCT

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MSNLSIPTTSPDDYYRQRIDMQPAFNSDLFQQLLEPENLHRAWRQVKANKGAAGIDGMTIEAFPLWMQQGGWQRCKSLLE
RGEYNPSAVRRVEIDKPDGGKRKLGIPNVIDRVIQQAIAQILTPLFDPFFSANSFGFRPNRNAKQAVLQVRDIIKQKRKF
AVDVDLSKFFDRVNHDLLMTQLRIKVQDKRLLALIGKYLRAGVTVNDQFEASFEGVPQGGPLSPLLSNIMLDSLDKELES
RGHKFARYADDFIILVKSIRAGERVLKSITRYLATKLKLVVNEQKSQVVEVGQSKFLGFTFNRGKIQWHAKTLHIFKQKM
KRLTNRNWGVSMGYQLFKVRQYMQGWINYFGIANAYQGCVDLDHWIRRRVRMCYWRQWRKPRTKVQNLLKRGVRIQAAVG
CGITSKGPWRSSKTPGIQQALSNDYLKKAGLCSLRDGWIAVHYPNQKV

Sequences:

>Translated_448_residues
MSNLSIPTTSPDDYYRQRIDMQPAFNSDLFQQLLEPENLHRAWRQVKANKGAAGIDGMTIEAFPLWMQQGGWQRCKSLLE
RGEYNPSAVRRVEIDKPDGGKRKLGIPNVIDRVIQQAIAQILTPLFDPFFSANSFGFRPNRNAKQAVLQVRDIIKQKRKF
AVDVDLSKFFDRVNHDLLMTQLRIKVQDKRLLALIGKYLRAGVTVNDQFEASFEGVPQGGPLSPLLSNIMLDSLDKELES
RGHKFARYADDFIILVKSIRAGERVLKSITRYLATKLKLVVNEQKSQVVEVGQSKFLGFTFNRGKIQWHAKTLHIFKQKM
KRLTNRNWGVSMGYQLFKVRQYMQGWINYFGIANAYQGCVDLDHWIRRRVRMCYWRQWRKPRTKVQNLLKRGVRIQAAVG
CGITSKGPWRSSKTPGIQQALSNDYLKKAGLCSLRDGWIAVHYPNQKV
>Mature_447_residues
SNLSIPTTSPDDYYRQRIDMQPAFNSDLFQQLLEPENLHRAWRQVKANKGAAGIDGMTIEAFPLWMQQGGWQRCKSLLER
GEYNPSAVRRVEIDKPDGGKRKLGIPNVIDRVIQQAIAQILTPLFDPFFSANSFGFRPNRNAKQAVLQVRDIIKQKRKFA
VDVDLSKFFDRVNHDLLMTQLRIKVQDKRLLALIGKYLRAGVTVNDQFEASFEGVPQGGPLSPLLSNIMLDSLDKELESR
GHKFARYADDFIILVKSIRAGERVLKSITRYLATKLKLVVNEQKSQVVEVGQSKFLGFTFNRGKIQWHAKTLHIFKQKMK
RLTNRNWGVSMGYQLFKVRQYMQGWINYFGIANAYQGCVDLDHWIRRRVRMCYWRQWRKPRTKVQNLLKRGVRIQAAVGC
GITSKGPWRSSKTPGIQQALSNDYLKKAGLCSLRDGWIAVHYPNQKV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=266, Percent_Identity=29.3233082706767, Blast_Score=119, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=317, Percent_Identity=26.4984227129338, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 51646; Mature: 51514

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSIPTTSPDDYYRQRIDMQPAFNSDLFQQLLEPENLHRAWRQVKANKGAAGIDGMTI
CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCEE
EAFPLWMQQGGWQRCKSLLERGEYNPSAVRRVEIDKPDGGKRKLGIPNVIDRVIQQAIAQ
HHHHHHHHCCCHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
ILTPLFDPFFSANSFGFRPNRNAKQAVLQVRDIIKQKRKFAVDVDLSKFFDRVNHDLLMT
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
QLRIKVQDKRLLALIGKYLRAGVTVNDQFEASFEGVPQGGPLSPLLSNIMLDSLDKELES
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RGHKFARYADDFIILVKSIRAGERVLKSITRYLATKLKLVVNEQKSQVVEVGQSKFLGFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
FNRGKIQWHAKTLHIFKQKMKRLTNRNWGVSMGYQLFKVRQYMQGWINYFGIANAYQGCV
EECCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLDHWIRRRVRMCYWRQWRKPRTKVQNLLKRGVRIQAAVGCGITSKGPWRSSKTPGIQQA
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
LSNDYLKKAGLCSLRDGWIAVHYPNQKV
HHHHHHHHCCCCEECCCEEEEECCCCCC
>Mature Secondary Structure 
SNLSIPTTSPDDYYRQRIDMQPAFNSDLFQQLLEPENLHRAWRQVKANKGAAGIDGMTI
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCEE
EAFPLWMQQGGWQRCKSLLERGEYNPSAVRRVEIDKPDGGKRKLGIPNVIDRVIQQAIAQ
HHHHHHHHCCCHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
ILTPLFDPFFSANSFGFRPNRNAKQAVLQVRDIIKQKRKFAVDVDLSKFFDRVNHDLLMT
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
QLRIKVQDKRLLALIGKYLRAGVTVNDQFEASFEGVPQGGPLSPLLSNIMLDSLDKELES
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RGHKFARYADDFIILVKSIRAGERVLKSITRYLATKLKLVVNEQKSQVVEVGQSKFLGFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
FNRGKIQWHAKTLHIFKQKMKRLTNRNWGVSMGYQLFKVRQYMQGWINYFGIANAYQGCV
EECCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLDHWIRRRVRMCYWRQWRKPRTKVQNLLKRGVRIQAAVGCGITSKGPWRSSKTPGIQQA
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
LSNDYLKKAGLCSLRDGWIAVHYPNQKV
HHHHHHHHCCCCEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]