Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 126173977

GI number: 126173977

Start: 2032565

End: 2033314

Strand: Direct

Name: ybgF [H]

Synonym: Sbal_1748

Alternate gene names: 126173977

Gene position: 2032565-2033314 (Clockwise)

Preceding gene: 126173976

Following gene: 126173978

Centisome position: 39.64

GC content: 47.33

Gene sequence:

>750_bases
ATGAAACGTGCCGTCTTAATTACGGCAATGTTCCTTGGTGCGGGTGCTGCAGTTGCAGCACCTGCTCCTGTGGAAGATAT
TGCTGGTGGTTCGGGTGATGACAGACTTGCTCGCATAGAACGTATTGTAAAATCAAGACAACAAAGCGAGCTCGATATGC
AGCGCCGTCTTGATACACTGCAGCAGGAAGTGCTCGATTTACGTGGTTTAACCGAACAACAGAATTATCAGATTGAGCAG
ATGCAACAGCGTCAGCGTCAGTTATATGATGAACTTGCTAATTTATCCTCAAAGGCATCTGCCGCTCCTGCAGCCGCAGC
CGCGACATCCACACCTTCTGTAGCCTCGACGAATGCGGCTTCAAGTAGTTTAAGTGAAACTGCAAGCTATGAGAGTGCCG
TTAACTTAGTCTTGAAAGAGCGTAAGTATGACGACGCTATTCCTGCCTTCCGTGCTTTTATCAAACAATACCCAGATTCT
GTGTATGCCGCGAATGCTAACTATTGGTTAGGGCAGCTATTATTTAATAAGAGCGAATTTGCAGAAGCCAAACAAGCCTT
CAAAACTGTGGTTGACCGTTTTAGTGATTCCAATAAACGGGGTGACAGTTTAGTGAAGCTTGGCATGATCGCCGAGAAAA
CCGGTGACAAGGCTGGGGCGACGCAATACTACCAACAAGTCGTCAAAGATTACGCAAACAGCGCAGCAGCGCGCATTGCA
CAGCAGCAACTGGCTGCAATTAAAGCGTAA

Upstream 100 bases:

>100_bases
CGAAGAAAAACCACTTGATTTTTCTCGCACTGATGAAGGTTTTGGCAAAAACCGTCGTGCAGTTTTAGTTTACTAAGATT
GAATCTCGGAGAGTAACACA

Downstream 100 bases:

>100_bases
TTAACTAAAAAACATACTCTTAGTCTGTTTTTCATGCAAACGACAAAAAATTGGGAATTTGCGCTTGCATGAGAAGATGA
AAAAGGTATTATAGGCGCCC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKRAVLITAMFLGAGAAVAAPAPVEDIAGGSGDDRLARIERIVKSRQQSELDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDELANLSSKASAAPAAAAATSTPSVASTNAASSSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDS
VYAANANYWLGQLLFNKSEFAEAKQAFKTVVDRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIA
QQQLAAIKA

Sequences:

>Translated_249_residues
MKRAVLITAMFLGAGAAVAAPAPVEDIAGGSGDDRLARIERIVKSRQQSELDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDELANLSSKASAAPAAAAATSTPSVASTNAASSSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDS
VYAANANYWLGQLLFNKSEFAEAKQAFKTVVDRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIA
QQQLAAIKA
>Mature_249_residues
MKRAVLITAMFLGAGAAVAAPAPVEDIAGGSGDDRLARIERIVKSRQQSELDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDELANLSSKASAAPAAAAATSTPSVASTNAASSSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDS
VYAANANYWLGQLLFNKSEFAEAKQAFKTVVDRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIA
QQQLAAIKA

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=235, Percent_Identity=36.5957446808511, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27112; Mature: 27112

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAVLITAMFLGAGAAVAAPAPVEDIAGGSGDDRLARIERIVKSRQQSELDMQRRLDTL
CCCHHHHHHHHHHCCCHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQEVLDLRGLTEQQNYQIEQMQQRQRQLYDELANLSSKASAAPAAAAATSTPSVASTNAA
HHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHH
SSSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDSVYAANANYWLGQLLFNKSEF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHCHHHH
AEAKQAFKTVVDRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QQQLAAIKA
HHHHHHHCC
>Mature Secondary Structure
MKRAVLITAMFLGAGAAVAAPAPVEDIAGGSGDDRLARIERIVKSRQQSELDMQRRLDTL
CCCHHHHHHHHHHCCCHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQEVLDLRGLTEQQNYQIEQMQQRQRQLYDELANLSSKASAAPAAAAATSTPSVASTNAA
HHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHH
SSSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDSVYAANANYWLGQLLFNKSEF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHCHHHH
AEAKQAFKTVVDRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QQQLAAIKA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]