| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is rec2 [H]
Identifier: 126173913
GI number: 126173913
Start: 1959966
End: 1962317
Strand: Direct
Name: rec2 [H]
Synonym: Sbal_1682
Alternate gene names: 126173913
Gene position: 1959966-1962317 (Clockwise)
Preceding gene: 126173906
Following gene: 126173914
Centisome position: 38.23
GC content: 47.83
Gene sequence:
>2352_bases ATGAATCGATTCATGTTTGGCTTTAGTGCCATCTTGTTATCAGCGATGTTGTGGCCTTCGCTGCCGCCAGTCAGTTATAT ACCCTACCTTGCTGTTGGGGCGTTAATTTTATACCGAAAAATCCCTGTCTGCGCAGGTGGACTCTTTGCAATGGCATGGC TAACTGGTTTTTGCTTAGGATTATCTAGGCAGGATCTTCCAGTGTTACAACAACCTATACAGGTTAGGGGTGAAATCATA TCACTAGTTAGTCGAAACAGCGACTGGCTAAGTTTGGATATATCGGTCATTAAACCAAATTTAATCTTAGGGCCAAATGC AAAATTGCGACTCACGTGGAAAGATCCGCCAGAAGTCGATGTCGGTCAGGTTTGGCAGTTTACCTTGATGCCTAAGAGTA TTGCTAGCGTGTTAAATCAAGGTGGTTACAACGAGCAGAAACAATTAATCAGCCAACATGTTGTCGGTAAAGGGCGAGTG ATAGAGGCACATTTACTTGCGGTTTCACCTTCACTGCGTAACGAGCTGATAAGCGCATTGACGCCTGAATTAGCCTCTTT GCCGCAAGGTGATATTCTACTCGCCTTACTTTTGGGTGATAAGCAGTTGATCTCAAAAGTGCGTTGGCAAGCATTACGAC AGACAGGTACGGGTCATTTAGTGGCGATATCCGGCTTGCATCTTTCGGTCATAGCAGCATGGATTTACACATGTCTTTTG TTTGGCTTAAGTCGCTTAGTGCCACATCAGAGTCGGCGTAATATCACCATTGCCTTAGTCGCAGCGGGCATAGGCGCCGC ATTTTATGCTTATCTTGCGGGCTTTGGCATTTCGACGCAGCGTGCATTAGTGATGATTCTGCTGTTAATGCTGTTGAGTT TATTAAAGCGCTTTTCTACGGCGTGGGAGCGCTTATTATTCGCCCTGTTCATTGTATTACTGCTTGATCCGCTCGCTTGT TTAAGTGCGGGATTTTGGCTGTCGTTTTGTGCCTTAGGCATCATCTTATACACCTTAGAAATCCAACCAAGGGCATTTAC CCCTGCGTCGACTCGAAGGGCGCGTTTACGCACTGGGATGATGCAGTTTTGGGCTATCCAATGGCGCTTGAGTCTCGGGC TTGGATTACTGCAAGCGGCACTCTTTGGCGGCGTGAGCGTACACAGTCTGTGGATGAACATCTTGGCCGTGCCCTGGTTT AGCTTTGTAGTGATCCCCTTAGCCATGGCGGGATTTGTCTGCTGGTGGCTTGGGACGGCTTTGGGATTATCTCACTTCGG ACTCTCTTCGCTTGGAGTACTGCGCCTCAGTGATTGGAGCTTATCGCCCTATGCGCAGTTGCTCGACATCAGCCAGCAAT TACCCGCCCATTGGTTAGCACTCTCTGACAGCTTATTAGCCTTAGGATTCTGCGCGCTCGTTGGTGGTGTGTTATGGCGC TATGTGCCTAAGCATAAACACTATATTGCTTGGTTAAGCCTATTAAGTTTGTTGTTTATTCCCGCATTACTTTTTTGTAT GACGCTATGGTCTCCCGTGCAAACCCATCGATGGACCATGCATTTACTCGATGTGGGCCAAGGTTTAACCGTGGTGATTG AAAAGAATGGCAGGGGTTTCATCTATGACACGGGCGCCGCCTTTGGTGATGATTTCAGTTATGCGGAGCGGGTGATATTG CCCTTTTTAAAAGCCAAAGGCATCCAAGAGATTGATTATATTGTTATCAGCCATAGCGATAACGATCATGCAGGCGGTGC GCCTGTCTTGATTGAGGCTTATCCCAAGGCTTTGGTGATCACAGATGTGGCTGGCTTTAGCGGCCAAGATTGCCGTCCAA GGCAGATTCAATGGCAAGGATTGCGCCTTAACTTACTCTCGCCGCCTCAAGTGCTGGCGGGCAATAATGGCTCCTGTGTG GTGCGCATTGATGATGGCCTGCAAAGTCTGCTACTCACCGGGGACATTGAAAAACAAACCGAAGCGGTACTATTACGTAG TGAGTTAAGCGTGAACGGTGATCTAAGTGACCTAAACGAGTTACAAAGCGACGTGCTGGTGGCGCCGCACCATGGCAGTA AAACCTCGTCGACGGAGGACTTTATCGATGCCGTTGCCCCTAAGTTAGTGCTGTTTCCGGCGGGTTTTGCTAATCGCTAT GGTTTTCCTAAATACACAGTGGTTGAACGTTATCAGCGGCGAGAGATTAGGAGCCTGACCACAGGGTCAGAAGGGCAGAT TAGTGTGATTTTTCAGCAGTCTGAGTTAGAGGTAAAGACCTATCGTGGTGATTTAGCGCCATTTTGGTACAACTCTCTGT TTAGATTTGGTGACTTGATTAATCCAGAGTAG
Upstream 100 bases:
>100_bases CGTAAGTGTTTATGCTCACGCAAGGTTTCAGGCTTAGGCATAAATCTTTTGATTAATTTTTTTGGCATAGGCTGAAATTG CTGTCTTAACTTAATTCACT
Downstream 100 bases:
>100_bases AATGCCTACTTTGCCATAATTTAGTGTTATCAATGACAACATCTCCTAAAGACGAAATGTGGACAGTTTTCAAACGATTA CTGGGCTATATAAAACAGAT
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MNRFMFGFSAILLSAMLWPSLPPVSYIPYLAVGALILYRKIPVCAGGLFAMAWLTGFCLGLSRQDLPVLQQPIQVRGEII SLVSRNSDWLSLDISVIKPNLILGPNAKLRLTWKDPPEVDVGQVWQFTLMPKSIASVLNQGGYNEQKQLISQHVVGKGRV IEAHLLAVSPSLRNELISALTPELASLPQGDILLALLLGDKQLISKVRWQALRQTGTGHLVAISGLHLSVIAAWIYTCLL FGLSRLVPHQSRRNITIALVAAGIGAAFYAYLAGFGISTQRALVMILLLMLLSLLKRFSTAWERLLFALFIVLLLDPLAC LSAGFWLSFCALGIILYTLEIQPRAFTPASTRRARLRTGMMQFWAIQWRLSLGLGLLQAALFGGVSVHSLWMNILAVPWF SFVVIPLAMAGFVCWWLGTALGLSHFGLSSLGVLRLSDWSLSPYAQLLDISQQLPAHWLALSDSLLALGFCALVGGVLWR YVPKHKHYIAWLSLLSLLFIPALLFCMTLWSPVQTHRWTMHLLDVGQGLTVVIEKNGRGFIYDTGAAFGDDFSYAERVIL PFLKAKGIQEIDYIVISHSDNDHAGGAPVLIEAYPKALVITDVAGFSGQDCRPRQIQWQGLRLNLLSPPQVLAGNNGSCV VRIDDGLQSLLLTGDIEKQTEAVLLRSELSVNGDLSDLNELQSDVLVAPHHGSKTSSTEDFIDAVAPKLVLFPAGFANRY GFPKYTVVERYQRREIRSLTTGSEGQISVIFQQSELEVKTYRGDLAPFWYNSLFRFGDLINPE
Sequences:
>Translated_783_residues MNRFMFGFSAILLSAMLWPSLPPVSYIPYLAVGALILYRKIPVCAGGLFAMAWLTGFCLGLSRQDLPVLQQPIQVRGEII SLVSRNSDWLSLDISVIKPNLILGPNAKLRLTWKDPPEVDVGQVWQFTLMPKSIASVLNQGGYNEQKQLISQHVVGKGRV IEAHLLAVSPSLRNELISALTPELASLPQGDILLALLLGDKQLISKVRWQALRQTGTGHLVAISGLHLSVIAAWIYTCLL FGLSRLVPHQSRRNITIALVAAGIGAAFYAYLAGFGISTQRALVMILLLMLLSLLKRFSTAWERLLFALFIVLLLDPLAC LSAGFWLSFCALGIILYTLEIQPRAFTPASTRRARLRTGMMQFWAIQWRLSLGLGLLQAALFGGVSVHSLWMNILAVPWF SFVVIPLAMAGFVCWWLGTALGLSHFGLSSLGVLRLSDWSLSPYAQLLDISQQLPAHWLALSDSLLALGFCALVGGVLWR YVPKHKHYIAWLSLLSLLFIPALLFCMTLWSPVQTHRWTMHLLDVGQGLTVVIEKNGRGFIYDTGAAFGDDFSYAERVIL PFLKAKGIQEIDYIVISHSDNDHAGGAPVLIEAYPKALVITDVAGFSGQDCRPRQIQWQGLRLNLLSPPQVLAGNNGSCV VRIDDGLQSLLLTGDIEKQTEAVLLRSELSVNGDLSDLNELQSDVLVAPHHGSKTSSTEDFIDAVAPKLVLFPAGFANRY GFPKYTVVERYQRREIRSLTTGSEGQISVIFQQSELEVKTYRGDLAPFWYNSLFRFGDLINPE >Mature_783_residues MNRFMFGFSAILLSAMLWPSLPPVSYIPYLAVGALILYRKIPVCAGGLFAMAWLTGFCLGLSRQDLPVLQQPIQVRGEII SLVSRNSDWLSLDISVIKPNLILGPNAKLRLTWKDPPEVDVGQVWQFTLMPKSIASVLNQGGYNEQKQLISQHVVGKGRV IEAHLLAVSPSLRNELISALTPELASLPQGDILLALLLGDKQLISKVRWQALRQTGTGHLVAISGLHLSVIAAWIYTCLL FGLSRLVPHQSRRNITIALVAAGIGAAFYAYLAGFGISTQRALVMILLLMLLSLLKRFSTAWERLLFALFIVLLLDPLAC LSAGFWLSFCALGIILYTLEIQPRAFTPASTRRARLRTGMMQFWAIQWRLSLGLGLLQAALFGGVSVHSLWMNILAVPWF SFVVIPLAMAGFVCWWLGTALGLSHFGLSSLGVLRLSDWSLSPYAQLLDISQQLPAHWLALSDSLLALGFCALVGGVLWR YVPKHKHYIAWLSLLSLLFIPALLFCMTLWSPVQTHRWTMHLLDVGQGLTVVIEKNGRGFIYDTGAAFGDDFSYAERVIL PFLKAKGIQEIDYIVISHSDNDHAGGAPVLIEAYPKALVITDVAGFSGQDCRPRQIQWQGLRLNLLSPPQVLAGNNGSCV VRIDDGLQSLLLTGDIEKQTEAVLLRSELSVNGDLSDLNELQSDVLVAPHHGSKTSSTEDFIDAVAPKLVLFPAGFANRY GFPKYTVVERYQRREIRSLTTGSEGQISVIFQQSELEVKTYRGDLAPFWYNSLFRFGDLINPE
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081801, Length=666, Percent_Identity=31.2312312312312, Blast_Score=278, Evalue=8e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 86512; Mature: 86512
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFMFGFSAILLSAMLWPSLPPVSYIPYLAVGALILYRKIPVCAGGLFAMAWLTGFCLG CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC LSRQDLPVLQQPIQVRGEIISLVSRNSDWLSLDISVIKPNLILGPNAKLRLTWKDPPEVD CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEECCCCEEEEEECCCCCCC VGQVWQFTLMPKSIASVLNQGGYNEQKQLISQHVVGKGRVIEAHLLAVSPSLRNELISAL CCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHH TPELASLPQGDILLALLLGDKQLISKVRWQALRQTGTGHLVAISGLHLSVIAAWIYTCLL CHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH FGLSRLVPHQSRRNITIALVAAGIGAAFYAYLAGFGISTQRALVMILLLMLLSLLKRFST HHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AWERLLFALFIVLLLDPLACLSAGFWLSFCALGIILYTLEIQPRAFTPASTRRARLRTGM HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHH MQFWAIQWRLSLGLGLLQAALFGGVSVHSLWMNILAVPWFSFVVIPLAMAGFVCWWLGTA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLSHFGLSSLGVLRLSDWSLSPYAQLLDISQQLPAHWLALSDSLLALGFCALVGGVLWR HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH YVPKHKHYIAWLSLLSLLFIPALLFCMTLWSPVQTHRWTMHLLDVGQGLTVVIEKNGRGF HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEECCCEE IYDTGAAFGDDFSYAERVILPFLKAKGIQEIDYIVISHSDNDHAGGAPVLIEAYPKALVI EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEE TDVAGFSGQDCRPRQIQWQGLRLNLLSPPQVLAGNNGSCVVRIDDGLQSLLLTGDIEKQT EEECCCCCCCCCCCCEEECCEEEEECCCCCEEECCCCEEEEEECCCHHHHHHCCCCHHHH EAVLLRSELSVNGDLSDLNELQSDVLVAPHHGSKTSSTEDFIDAVAPKLVLFPAGFANRY HHHHHHHHCCCCCCHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHCCCEEEECCCHHHCC GFPKYTVVERYQRREIRSLTTGSEGQISVIFQQSELEVKTYRGDLAPFWYNSLFRFGDLI CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCC NPE CCC >Mature Secondary Structure MNRFMFGFSAILLSAMLWPSLPPVSYIPYLAVGALILYRKIPVCAGGLFAMAWLTGFCLG CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC LSRQDLPVLQQPIQVRGEIISLVSRNSDWLSLDISVIKPNLILGPNAKLRLTWKDPPEVD CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEECCCCEEEEEECCCCCCC VGQVWQFTLMPKSIASVLNQGGYNEQKQLISQHVVGKGRVIEAHLLAVSPSLRNELISAL CCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHH TPELASLPQGDILLALLLGDKQLISKVRWQALRQTGTGHLVAISGLHLSVIAAWIYTCLL CHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH FGLSRLVPHQSRRNITIALVAAGIGAAFYAYLAGFGISTQRALVMILLLMLLSLLKRFST HHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AWERLLFALFIVLLLDPLACLSAGFWLSFCALGIILYTLEIQPRAFTPASTRRARLRTGM HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHH MQFWAIQWRLSLGLGLLQAALFGGVSVHSLWMNILAVPWFSFVVIPLAMAGFVCWWLGTA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLSHFGLSSLGVLRLSDWSLSPYAQLLDISQQLPAHWLALSDSLLALGFCALVGGVLWR HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH YVPKHKHYIAWLSLLSLLFIPALLFCMTLWSPVQTHRWTMHLLDVGQGLTVVIEKNGRGF HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEECCCEE IYDTGAAFGDDFSYAERVILPFLKAKGIQEIDYIVISHSDNDHAGGAPVLIEAYPKALVI EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEE TDVAGFSGQDCRPRQIQWQGLRLNLLSPPQVLAGNNGSCVVRIDDGLQSLLLTGDIEKQT EEECCCCCCCCCCCCEEECCEEEEECCCCCEEECCCCEEEEEECCCHHHHHHCCCCHHHH EAVLLRSELSVNGDLSDLNELQSDVLVAPHHGSKTSSTEDFIDAVAPKLVLFPAGFANRY HHHHHHHHCCCCCCHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHCCCEEEECCCHHHCC GFPKYTVVERYQRREIRSLTTGSEGQISVIFQQSELEVKTYRGDLAPFWYNSLFRFGDLI CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCC NPE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]