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The map label for this gene is ycdX [C]

Identifier: 126173710

GI number: 126173710

Start: 1712404

End: 1713168

Strand: Direct

Name: ycdX [C]

Synonym: Sbal_1472

Alternate gene names: 126173710

Gene position: 1712404-1713168 (Clockwise)

Preceding gene: 126173709

Following gene: 126173711

Centisome position: 33.4

GC content: 49.15

Gene sequence:

>765_bases
ATGCAGTACCAAGTCGACACTCATACCCATACTGTGGCTTCGAGCCATGCTTACAGCACGATTCATGACTATATTGCCGT
AGCAAAACAAAAGGGTATCCGCCTATTTGCTAATACAGATCATGGGCCTGCGATGGCCGATGCACCGCATTTTTGGCACT
TTGTGAATTTAAGAGTGCTGCCACGTATGGTCGATGGCGTCGGGATTTTGCGCGGTATCGAAGCCAACATAAAAAATATC
GACGGCGAGATTGATTTCTTTGGCGATTATCTAAAGCAGCTGGATATTGTGCTCGCGGGATTCCATGAGCCGGTTTATCC
GCCATCTGATAAGGCAACCCACACAGAGGCCATGATTAATACCATTAAGAGTGGCAAGGTTGATATCATTACTCATCCGG
GGAATCCAGCCTATCCAATTGATATTGAAGCCGTTGCCCGCGCCGCTGCCGAATACGGTGTAGCGCTTGAAATTAACAAT
TCCTCCTTTGAAGTGTCCCGTAAGGGCAGCGAAGCCAATTGCACTGCGATTGCCAAAGCGGCCAAGGAGTTTGGTACTAT
TTTAGTTATGGGCTCTGATTCCCATGTGGCCTTTAGTTTGGGCGGTTTTGCGCGGGCGCAAGCGATCATCGATGAAGTGG
CTTATCCGCCATCACGATTACTCAATCGCAGTCCTTCTGCACTCTTGGCCTTTTTAGCCGCCCGTGGTCATGAAACCGTC
GCCGATTTGATCCCCTTATTTAGCGACGATGAGCCATGCTGTTGA

Upstream 100 bases:

>100_bases
AAGGGCACATGGCAAGGAAGCGCCGATGAACTGTTATCGCTTTTTAGCTAATCATGGCCAGTTTTTCTAAATTGATTGAA
TCATTTGACTGAGGTGAACC

Downstream 100 bases:

>100_bases
TCCGTGATGAAAATAGTGGCAATTAAAGTGACGCCACTTCAATGTGTTGAGACAAGAGCCACAGACGCTAACACTCCTCA
AGTGGTAATAATCACGGGCG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MQYQVDTHTHTVASSHAYSTIHDYIAVAKQKGIRLFANTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNI
DGEIDFFGDYLKQLDIVLAGFHEPVYPPSDKATHTEAMINTIKSGKVDIITHPGNPAYPIDIEAVARAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKEFGTILVMGSDSHVAFSLGGFARAQAIIDEVAYPPSRLLNRSPSALLAFLAARGHETV
ADLIPLFSDDEPCC

Sequences:

>Translated_254_residues
MQYQVDTHTHTVASSHAYSTIHDYIAVAKQKGIRLFANTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNI
DGEIDFFGDYLKQLDIVLAGFHEPVYPPSDKATHTEAMINTIKSGKVDIITHPGNPAYPIDIEAVARAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKEFGTILVMGSDSHVAFSLGGFARAQAIIDEVAYPPSRLLNRSPSALLAFLAARGHETV
ADLIPLFSDDEPCC
>Mature_254_residues
MQYQVDTHTHTVASSHAYSTIHDYIAVAKQKGIRLFANTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNI
DGEIDFFGDYLKQLDIVLAGFHEPVYPPSDKATHTEAMINTIKSGKVDIITHPGNPAYPIDIEAVARAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKEFGTILVMGSDSHVAFSLGGFARAQAIIDEVAYPPSRLLNRSPSALLAFLAARGHETV
ADLIPLFSDDEPCC

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=244, Percent_Identity=62.7049180327869, Blast_Score=304, Evalue=4e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27485; Mature: 27485

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYQVDTHTHTVASSHAYSTIHDYIAVAKQKGIRLFANTDHGPAMADAPHFWHFVNLRVL
CCEEECCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEHHHHHHH
PRMVDGVGILRGIEANIKNIDGEIDFFGDYLKQLDIVLAGFHEPVYPPSDKATHTEAMIN
HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
TIKSGKVDIITHPGNPAYPIDIEAVARAAAEYGVALEINNSSFEVSRKGSEANCTAIAKA
HHCCCCEEEEECCCCCCCCEEHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
AKEFGTILVMGSDSHVAFSLGGFARAQAIIDEVAYPPSRLLNRSPSALLAFLAARGHETV
HHHHCEEEEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHH
ADLIPLFSDDEPCC
HHHHHHCCCCCCCC
>Mature Secondary Structure
MQYQVDTHTHTVASSHAYSTIHDYIAVAKQKGIRLFANTDHGPAMADAPHFWHFVNLRVL
CCEEECCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEHHHHHHH
PRMVDGVGILRGIEANIKNIDGEIDFFGDYLKQLDIVLAGFHEPVYPPSDKATHTEAMIN
HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
TIKSGKVDIITHPGNPAYPIDIEAVARAAAEYGVALEINNSSFEVSRKGSEANCTAIAKA
HHCCCCEEEEECCCCCCCCEEHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
AKEFGTILVMGSDSHVAFSLGGFARAQAIIDEVAYPPSRLLNRSPSALLAFLAARGHETV
HHHHCEEEEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHH
ADLIPLFSDDEPCC
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA