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The map label for this gene is syd [H]

Identifier: 126173670

GI number: 126173670

Start: 1664308

End: 1664958

Strand: Direct

Name: syd [H]

Synonym: Sbal_1432

Alternate gene names: 126173670

Gene position: 1664308-1664958 (Clockwise)

Preceding gene: 126173668

Following gene: 126173673

Centisome position: 32.46

GC content: 46.08

Gene sequence:

>651_bases
GTGTCTTGTCTGCCCGCACTCGATAAATTTTTGCAAAACTACCATCAAGCTTACCTAACGAGTTTAGGTGAACTACCGCG
TTATTACCCACAGGGTGAGCCTTCTGTGTGTATTCAAGGCGAATTTCATGCTGATCTTGATCAAGCCGTTTCTTGGCAGC
CGGTTAAACGCGAAGTCGAAGGCAGTTTTGCCAATGTTGAGCATGCGCTTGAGTTGACTTTATGGCCAGAAATCAATCAT
TTTTACGGTCAGTATTTTTCTGCACCGTTATTATTCGACTCAGAATGGGGCACGGGTGAGTTACTGCAAGTGTGGAATGA
GGATGATTTTACCTGCCTGCAGCAAAACCTGATTGGTCATCTAATGATGAAGAAAAAACTCAAGCAGCCACCGACGTGGT
TTATCGGTTTGTTAGATGAGGGCGATAAAATGCTCACCATCAACAACAGTGATGGCAGCGTGTGGATAGAGCTTCCAGGT
GAGATCCCCACCCAGCAACTGTCGCCAAGTTTAGCGGAATTTATTGGGGCGTTATCACCACGGATAGCACCACCCGTTAA
ACATGAAGAACTGCCTATGCCCGCATTAGAACATCCGGGGATTTTTGCCAGCTTTAAACGTATGTGGCAAAACCTCTTTG
GTAAACGCTAG

Upstream 100 bases:

>100_bases
AGCGCTTGCGCATCACTATAGGGATCGTGATTCTGTGTCATCAATACTGTTTCCATGTCAAAATAGGCGCACATTATACC
TGAAATTGGATTGTGCTTAA

Downstream 100 bases:

>100_bases
TTGGCGTGAGCTTGACGCTATCTTGCGGCGAGCTCTCAGCCTTCTACCACGTTTAGTCAAAGTGTTAACGCTCAACCACA
CTTAGTTTGAGCGGAACATT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSCLPALDKFLQNYHQAYLTSLGELPRYYPQGEPSVCIQGEFHADLDQAVSWQPVKREVEGSFANVEHALELTLWPEINH
FYGQYFSAPLLFDSEWGTGELLQVWNEDDFTCLQQNLIGHLMMKKKLKQPPTWFIGLLDEGDKMLTINNSDGSVWIELPG
EIPTQQLSPSLAEFIGALSPRIAPPVKHEELPMPALEHPGIFASFKRMWQNLFGKR

Sequences:

>Translated_216_residues
MSCLPALDKFLQNYHQAYLTSLGELPRYYPQGEPSVCIQGEFHADLDQAVSWQPVKREVEGSFANVEHALELTLWPEINH
FYGQYFSAPLLFDSEWGTGELLQVWNEDDFTCLQQNLIGHLMMKKKLKQPPTWFIGLLDEGDKMLTINNSDGSVWIELPG
EIPTQQLSPSLAEFIGALSPRIAPPVKHEELPMPALEHPGIFASFKRMWQNLFGKR
>Mature_215_residues
SCLPALDKFLQNYHQAYLTSLGELPRYYPQGEPSVCIQGEFHADLDQAVSWQPVKREVEGSFANVEHALELTLWPEINHF
YGQYFSAPLLFDSEWGTGELLQVWNEDDFTCLQQNLIGHLMMKKKLKQPPTWFIGLLDEGDKMLTINNSDGSVWIELPGE
IPTQQLSPSLAEFIGALSPRIAPPVKHEELPMPALEHPGIFASFKRMWQNLFGKR

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family [H]

Homologues:

Organism=Escherichia coli, GI1789157, Length=151, Percent_Identity=37.7483443708609, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009948 [H]

Pfam domain/function: PF07348 Syd [H]

EC number: NA

Molecular weight: Translated: 24642; Mature: 24511

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCLPALDKFLQNYHQAYLTSLGELPRYYPQGEPSVCIQGEFHADLDQAVSWQPVKREVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHCCCCHHHHHHC
GSFANVEHALELTLWPEINHFYGQYFSAPLLFDSEWGTGELLQVWNEDDFTCLQQNLIGH
CCHHHHHHEEEEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCHHHHHHHHHHH
LMMKKKLKQPPTWFIGLLDEGDKMLTINNSDGSVWIELPGEIPTQQLSPSLAEFIGALSP
HHHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHCCHHHHHHHHHHCC
RIAPPVKHEELPMPALEHPGIFASFKRMWQNLFGKR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SCLPALDKFLQNYHQAYLTSLGELPRYYPQGEPSVCIQGEFHADLDQAVSWQPVKREVE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHCCCCHHHHHHC
GSFANVEHALELTLWPEINHFYGQYFSAPLLFDSEWGTGELLQVWNEDDFTCLQQNLIGH
CCHHHHHHEEEEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCHHHHHHHHHHH
LMMKKKLKQPPTWFIGLLDEGDKMLTINNSDGSVWIELPGEIPTQQLSPSLAEFIGALSP
HHHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHCCHHHHHHHHHHCC
RIAPPVKHEELPMPALEHPGIFASFKRMWQNLFGKR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA