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The map label for this gene is pecS [H]

Identifier: 126173638

GI number: 126173638

Start: 1610847

End: 1611485

Strand: Direct

Name: pecS [H]

Synonym: Sbal_1400

Alternate gene names: 126173638

Gene position: 1610847-1611485 (Clockwise)

Preceding gene: 126173636

Following gene: 126173639

Centisome position: 31.42

GC content: 49.61

Gene sequence:

>639_bases
ATGACAGCGAAAATGACACTCACTCACGCAAGCCCTGCGGATACTAACGCGAGTTCAGCGGATAAAAACGCGAGTTCAGC
GGATAAAAACGCGAGTCTTGCGGATAAAGACCAAGCAGCTTCGAACACCAAAGCAGATGGCCTTGAAAGCGAAGATGGTT
TGGATAGCATTGTCGGCCAATGGCAGCAACAAGGGGTGACTGATGATTTGATCCCTATGGCTGTGCTCGGGCGAATCGCG
CGTTTAACTAAATATATCGAAGTGGTACTGCTGCAATGCCACGCCGAATTTGGCTTAGGTCAAGGCGAGTTCGATGTGCT
TGCCACCTTAAGGCGTTCGGGTGAGCCGTTTACACTCTCACCTTCACAGCTTTATCTGAGCATGATGCTAAGCTCTGGCG
CTATGACGAGTCGTTTAGACAGACTCGAAAATAAGGGGCTGATTGAGCGGGCGCACAGTAAGGAAGATCGCCGCGCCGTA
CATGTCTCGTTAACTGCTGAGGGTAAGGCGCTCATTGATAAGGCCTTGCCGCAGCATATTCAATGTCAGAGTGCATTGTT
AGCGGGCGTGAGCGTTGAAGATAGACCTATGTTGTTGCAGATTTTAAAATCTTGGCTGAACCAATTTGAGCCGCAATAA

Upstream 100 bases:

>100_bases
CTCTTTCAGATGTATCTTGATATAAAGATATTTTAATTCTGCGAGAAAATGACTAAGATGTAAAGAATGATATAAAGAAT
CTTTATGTTGAGATAAAGCT

Downstream 100 bases:

>100_bases
ATTGTTTAAACTTCACGTGATCATTTAGTTTTTGTTTTCTAGTTTTAAGCTTCTATTTTTTAGTTTCTAGTGTTAGACAT
CTGGCGAGAAGCGATAGCCG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQWQQQGVTDDLIPMAVLGRIA
RLTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLSPSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAV
HVSLTAEGKALIDKALPQHIQCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ

Sequences:

>Translated_212_residues
MTAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQWQQQGVTDDLIPMAVLGRIA
RLTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLSPSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAV
HVSLTAEGKALIDKALPQHIQCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ
>Mature_211_residues
TAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQWQQQGVTDDLIPMAVLGRIAR
LTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLSPSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAVH
VSLTAEGKALIDKALPQHIQCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 22975; Mature: 22844

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQ
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHH
WQQQGVTDDLIPMAVLGRIARLTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLS
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEC
PSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAVHVSLTAEGKALIDKALPQHI
HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH
QCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQ
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHH
WQQQGVTDDLIPMAVLGRIARLTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLS
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEC
PSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAVHVSLTAEGKALIDKALPQHI
HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH
QCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]