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The map label for this gene is ycfQ [H]

Identifier: 126173486

GI number: 126173486

Start: 1435059

End: 1435640

Strand: Reverse

Name: ycfQ [H]

Synonym: Sbal_1248

Alternate gene names: 126173486

Gene position: 1435640-1435059 (Counterclockwise)

Preceding gene: 126173488

Following gene: 126173483

Centisome position: 28.0

GC content: 46.22

Gene sequence:

>582_bases
ATGCGTAATGCAGAGTTCGACCGAGAACAGGTACTTCGCGGCGCGATGGCCGCCTTCATGCACAAGGGTTACACCAAAAC
GAGCATGCAAGATCTAACTCAAGCCACGGGATTACATCCGGGGTCGATTTACTGCGCTTTTACCAATAAACGCGGATTAC
TAATCGCAGCCATTGAGCAATATCAACTCGACAGAAATGCGCAGTTCAACAGCCTGTTCGCCAATAGCAAAAATGTACTA
ACGAACTTGAAAACCTATTTAGATCAAATTGTTGCCGAATGCCTAAGTTGCGATAGTGCCCAAGCTTGTTTATTGACGAA
GGCATTAAATGAAGTGGCTGAGCAAGATGTTGAGATTAGAGACATCATCAATCAGTATCTGCAATCTTGGCAGCAAGCGC
TAACGCAGCAGTTTACCAGCGCAGCCGAGCAAGGACTGCTAGAAGGTCATCGCAGCGACGAGCAAAGAGCCCAATATTTT
ATGATGGGAATTTATGGTTTAAGAACCTTCGCTCACACCCATCCAAATACCGAAACCCTTCAACATCTTGCCGATCGATT
GCTGACTGAGGTCTGCCATTAA

Upstream 100 bases:

>100_bases
ATATTATTATTTGAACGATCATTCAAGTTAATTTTTGAATGTTCATTCAAAATTAGGTAGAATTCGGCCTAAGCGTTTCT
ATACAAGTGAATTAAATTCG

Downstream 100 bases:

>100_bases
AAGCGTTTTAATCTGTTCTATAACGAATATCTGGGCGACTAAATCGACAGAGTGTAGATAGTCTTTAGACAAATAGTGTT
TAGCGAGATGCCGCTGTATT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRNAEFDREQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFTNKRGLLIAAIEQYQLDRNAQFNSLFANSKNVL
TNLKTYLDQIVAECLSCDSAQACLLTKALNEVAEQDVEIRDIINQYLQSWQQALTQQFTSAAEQGLLEGHRSDEQRAQYF
MMGIYGLRTFAHTHPNTETLQHLADRLLTEVCH

Sequences:

>Translated_193_residues
MRNAEFDREQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFTNKRGLLIAAIEQYQLDRNAQFNSLFANSKNVL
TNLKTYLDQIVAECLSCDSAQACLLTKALNEVAEQDVEIRDIINQYLQSWQQALTQQFTSAAEQGLLEGHRSDEQRAQYF
MMGIYGLRTFAHTHPNTETLQHLADRLLTEVCH
>Mature_193_residues
MRNAEFDREQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFTNKRGLLIAAIEQYQLDRNAQFNSLFANSKNVL
TNLKTYLDQIVAECLSCDSAQACLLTKALNEVAEQDVEIRDIINQYLQSWQQALTQQFTSAAEQGLLEGHRSDEQRAQYF
MMGIYGLRTFAHTHPNTETLQHLADRLLTEVCH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21882; Mature: 21882

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNAEFDREQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFTNKRGLLIAAIEQ
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
YQLDRNAQFNSLFANSKNVLTNLKTYLDQIVAECLSCDSAQACLLTKALNEVAEQDVEIR
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
DIINQYLQSWQQALTQQFTSAAEQGLLEGHRSDEQRAQYFMMGIYGLRTFAHTHPNTETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QHLADRLLTEVCH
HHHHHHHHHHHCC
>Mature Secondary Structure
MRNAEFDREQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFTNKRGLLIAAIEQ
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
YQLDRNAQFNSLFANSKNVLTNLKTYLDQIVAECLSCDSAQACLLTKALNEVAEQDVEIR
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
DIINQYLQSWQQALTQQFTSAAEQGLLEGHRSDEQRAQYFMMGIYGLRTFAHTHPNTETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QHLADRLLTEVCH
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]