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The map label for this gene is yebA [H]

Identifier: 126173408

GI number: 126173408

Start: 1348283

End: 1349689

Strand: Reverse

Name: yebA [H]

Synonym: Sbal_1169

Alternate gene names: 126173408

Gene position: 1349689-1348283 (Counterclockwise)

Preceding gene: 126173410

Following gene: 126173407

Centisome position: 26.32

GC content: 45.42

Gene sequence:

>1407_bases
ATGGGAAAGGTTATAACATTATTTAAATTGTTGCCTAAAAAGCATCAAATTCTCCTCAGCATTCTTTCAGTTATCACTAT
GATAACCATGCTACTACCTTCTGAAGAAGCGCAAGCTTCAAGACAAACCACCAGCATAGATGACCAAGCTCAAATCAACA
CCCGTTATGATGTGCCTTTAGCATTTCGCTCGCCTGAACGTCCTGAGTTATTAGAGGGCCAAACAGACAATGCGCCCACA
AATGCTACGCCATTATCGTCAACCGACGCGCTTGCCGCAGGTGATGCCAATAATCCAGCCACTGAATCCTTAGAGAGTGC
CCATCACAGGGACGTCGAACATTTTAACGTGAAAAATGGTGATACCTTAGCCGCGGTATTTGATCGCGCAGGTTTAACCA
GCAAAGACGTGTATGAAATCACCCAACTCCCCTTAGCCAAGCAAAACTTACTTAAGATTATGCCGGGCGAAGAAATCGTG
ATTTCGAAAGATATAAATGGTGATTTGACCGAAGTGCGTTATCGCGTGAATGCAATTTCGACGCTCATCATCACCAAGAA
TCAAAATCAATACCAAGAAAAAATCTCCGAGAAGGATGTGGAAATCCGCAGCCATTTCACCAGCGCTAAGATTAAGAGCA
ACTTCTGGAACGCCGCCGTCGATGCAGGCATGAATGCAAACCAGATCATGCAGTTATCGACCGTATTCGGCTGGGATATC
GACTTTGCCTTAGATTTACGCGAGGGCGACAGCTTTGCCATTATTTATGAGCAAGAATATGCCGATGGCGAATTTTTGCG
TAACGGCAATATCTTAGCCGCAGAATTTGTAAACCAAGATGAGCGCTATACAGCCATTCGCTATACCGACGGTAACTATT
ATTCCGAGAATGGCACTAGCATGCGTAAAGCCTTCTTGCGCTCGCCAGTCGATTTTAAATATGTCAGCTCAAACTTCAAT
CCAAGACGTTTGCACCCAGTAACGGGCCAAGTCAAAGCCCATCGCGGTGTGGACTACGTCGCCGCCATTGGCACGCCCAT
TAAAGCGGCGGGTAGCGGACGCGTCATCGAGGCGGGCTACAATCAATTCAACGGTAACTATGTGTTTATCAAACACAACG
ATACCTATACCACCAAATATCTTCACCTCACTAAGCGCAACGTCAGCAAAGGAGCCAGCGTTAAGCAAGGGCAAATCATA
GGTACTTTAGGTAAAACGGGGCGCGTCACGGGTGCACATTTACATTACGAATTTATCGTCAATGGCGTCCATCGCAACCC
AAGAACTATAACGCTACCTAAAGCCGAATCGATTGCGAGAAAAGAAAAAAATCAATTCGATACACTTAGCCAGCAATTGA
TGACTACACTTTCGCAAAACAAGCAAACGCAATTGGCAATGCAATAA

Upstream 100 bases:

>100_bases
TCATAAAATGAAGAGACTTATGTTACTTGTTAGCCACCACAATTGAAAGTGTGTACACTAACGGGATTATTTAAGTCTCT
GGTTATCGGTATCGGCGTCA

Downstream 100 bases:

>100_bases
CGACGGACGGATTCCTCCCAATGAAAAACGCTTATTATATTGGACTTATGTCAGGCACCAGCATGGACGGTGTCGATGCC
GTATTGGTCGACTTTTCTGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNAPT
NATPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIV
ISKDINGDLTEVRYRVNAISTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFN
PRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQII
GTLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDTLSQQLMTTLSQNKQTQLAMQ

Sequences:

>Translated_468_residues
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNAPT
NATPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIV
ISKDINGDLTEVRYRVNAISTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFN
PRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQII
GTLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDTLSQQLMTTLSQNKQTQLAMQ
>Mature_467_residues
GKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNAPTN
ATPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVI
SKDINGDLTEVRYRVNAISTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDID
FALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFNP
RRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIG
TLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDTLSQQLMTTLSQNKQTQLAMQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=457, Percent_Identity=30.1969365426696, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 52254; Mature: 52122

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPL
CCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECEEECCEE
AFRSPERPELLEGQTDNAPTNATPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNG
EECCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEECCCC
DTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVISKDINGDLTEVRYRVNAIS
CCCEEEHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEEECCCCCHHHHHEEEEEEE
TLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
EEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCE
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTS
EEEEEECCCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCCEEEEEEECCCEECCCCHH
MRKAFLRSPVDFKYVSSNFNPRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGY
HHHHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCC
NQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIV
CCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
NGVHRNPRTITLPKAESIARKEKNQFDTLSQQLMTTLSQNKQTQLAMQ
ECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
GKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPL
CCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECEEECCEE
AFRSPERPELLEGQTDNAPTNATPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNG
EECCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEECCCC
DTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVISKDINGDLTEVRYRVNAIS
CCCEEEHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEEECCCCCHHHHHEEEEEEE
TLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
EEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCE
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTS
EEEEEECCCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCCEEEEEEECCCEECCCCHH
MRKAFLRSPVDFKYVSSNFNPRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGY
HHHHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCC
NQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIV
CCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
NGVHRNPRTITLPKAESIARKEKNQFDTLSQQLMTTLSQNKQTQLAMQ
ECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]