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The map label for this gene is xerC [H]

Identifier: 126173375

GI number: 126173375

Start: 1312135

End: 1313676

Strand: Direct

Name: xerC [H]

Synonym: Sbal_1136

Alternate gene names: 126173375

Gene position: 1312135-1313676 (Clockwise)

Preceding gene: 126173374

Following gene: 126173376

Centisome position: 25.59

GC content: 37.94

Gene sequence:

>1542_bases
ATGAATAAGACATTAAAAATTGCGTTTACCAATCAATCTATATCAAGTTTTTTGGCCTACTTAGGTTACAGAGTCTCTTC
TACTAGGAAGAGATTAAAAGTTGTCCAAGAGTTTGAGGTGTATTTAAATAGTCAATTTACGTTTGCAGAACTAGCTGCTT
TCCACGAGAGCATAGAAAGTTGGTGGGCGGGGAATTCTAAATACTTGGCTATAAATAGTCATGAGATAGCAGGTCTTTCA
ATTCGGCTTTACAAGTCTGAATTTACATTGAAAAATGAAAAGCTTACAGCGATAGGAGAATCTCTCGCGAGTGTTTATCT
AAGGCAGCGTGATACGCTTTCTGCAGCGCTGAAAACAATAAAGCTTGGCAATTTGACCAATTCTAATTTTCAAGTTCTTC
TGAAGGCTGCACAACACGTTAAAGCAGGAAATAATCTAGGGATAAAAATCGTCGACAAACAACGTGGAACATCCGCAAGT
GGAGAGAGTAGTGTTTCCCTTAGGGATTTTTTATATGGAGAATATGTAGAGACAAAACGATATGAAAATCCAAAAACGGT
AATGGTGAAGGTGGATATCATTTCACGTCATTTTGGGCATTTACTAGATAGCCCTATCGGTAATATTAATGCTGATTTGG
TACGGCAGTGGATGAAATCTAAAGAGCGAAAGTTGACGAAAAGGCAGTTAGCTGCGGGTGATAGTCTTTGGACGTTGAGT
CCTTCAACGATGAAAGAAGGTATTTGCACTTTTCGAGCCTGTATCCAGTTAGCAAAGGAAAAAGGTCTTATTAAAGATCA
TGATCTGTATAGCTTACCTAGAATAAGAGTCGATAATCAGGTCATTCGTTATCTATCTGACCATGAGGAATTAAGGCTGT
ATGCTGCAATTAACCAGCGCAACTCATTAAAACATGAGCAAAGAGCTAGGACGATTGAGCATAGGATATTACGCAGGCTA
GAAACGCCAGCGCATCTCGAAAGTTGTCATTTTGTGGATCATGTTTCACCTTTTATTATTTTGTTCAAAGAGACGGGAAT
TAGGCCTGGTACGTTGTTCAATTCAAAATGGTCTGATGTTGACTTGGACTCAAAATTTTTCCGTATTCGAAAATCGATTG
ATAAACGCGGAATATCTAATGTTATTCCTTTAAATTCTCTGGCGTTGGAGACACTAAAAGAATGGCGTAAACATGGCATT
CATAACGAATCTGCTAGTTATTTTAAGACCAGAATGGATGCTTGGTTATTTCCATCGCCAGCTAATCCTGAGCTTCAGCT
CACCACAATAAAAAAATCATGGGACATGATTATTAAAGAGGCAAAAATTGAAAATTTTAGGTTGTACGATTTACGGCATG
ATTTTGCATCTAAAGTGATGATGCAGACTGGTAACATCTATATGGTTAGTCAGCTGCTAAACCATCAACAGATTGAGACA
ACTAAACGTTATGCACATTTGATGGATAGCTCAAGGTTTGAAGCTGTGAATACACTTGATAAATCAAGACAAGTGGGTGC
ATTACCTGACTTTCTTAAGTAA

Upstream 100 bases:

>100_bases
TTTTGGCAACTTAGGGTTTTGCATGGTTTTGCACTGTTTTGCATGTATCATGTGCGATAGGTGTGCGATCAAATTTCATC
AAATTGAAGTGAGATAGCAC

Downstream 100 bases:

>100_bases
GTTAAGACACTGCTTCTATAGAACGTACTCTTCTATATTGTGAGAATGCAGATGTCTTATTATAATAATCATTTTTTAAT
ACAGTTACTTAGGTTGGTTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNKTLKIAFTNQSISSFLAYLGYRVSSTRKRLKVVQEFEVYLNSQFTFAELAAFHESIESWWAGNSKYLAINSHEIAGLS
IRLYKSEFTLKNEKLTAIGESLASVYLRQRDTLSAALKTIKLGNLTNSNFQVLLKAAQHVKAGNNLGIKIVDKQRGTSAS
GESSVSLRDFLYGEYVETKRYENPKTVMVKVDIISRHFGHLLDSPIGNINADLVRQWMKSKERKLTKRQLAAGDSLWTLS
PSTMKEGICTFRACIQLAKEKGLIKDHDLYSLPRIRVDNQVIRYLSDHEELRLYAAINQRNSLKHEQRARTIEHRILRRL
ETPAHLESCHFVDHVSPFIILFKETGIRPGTLFNSKWSDVDLDSKFFRIRKSIDKRGISNVIPLNSLALETLKEWRKHGI
HNESASYFKTRMDAWLFPSPANPELQLTTIKKSWDMIIKEAKIENFRLYDLRHDFASKVMMQTGNIYMVSQLLNHQQIET
TKRYAHLMDSSRFEAVNTLDKSRQVGALPDFLK

Sequences:

>Translated_513_residues
MNKTLKIAFTNQSISSFLAYLGYRVSSTRKRLKVVQEFEVYLNSQFTFAELAAFHESIESWWAGNSKYLAINSHEIAGLS
IRLYKSEFTLKNEKLTAIGESLASVYLRQRDTLSAALKTIKLGNLTNSNFQVLLKAAQHVKAGNNLGIKIVDKQRGTSAS
GESSVSLRDFLYGEYVETKRYENPKTVMVKVDIISRHFGHLLDSPIGNINADLVRQWMKSKERKLTKRQLAAGDSLWTLS
PSTMKEGICTFRACIQLAKEKGLIKDHDLYSLPRIRVDNQVIRYLSDHEELRLYAAINQRNSLKHEQRARTIEHRILRRL
ETPAHLESCHFVDHVSPFIILFKETGIRPGTLFNSKWSDVDLDSKFFRIRKSIDKRGISNVIPLNSLALETLKEWRKHGI
HNESASYFKTRMDAWLFPSPANPELQLTTIKKSWDMIIKEAKIENFRLYDLRHDFASKVMMQTGNIYMVSQLLNHQQIET
TKRYAHLMDSSRFEAVNTLDKSRQVGALPDFLK
>Mature_513_residues
MNKTLKIAFTNQSISSFLAYLGYRVSSTRKRLKVVQEFEVYLNSQFTFAELAAFHESIESWWAGNSKYLAINSHEIAGLS
IRLYKSEFTLKNEKLTAIGESLASVYLRQRDTLSAALKTIKLGNLTNSNFQVLLKAAQHVKAGNNLGIKIVDKQRGTSAS
GESSVSLRDFLYGEYVETKRYENPKTVMVKVDIISRHFGHLLDSPIGNINADLVRQWMKSKERKLTKRQLAAGDSLWTLS
PSTMKEGICTFRACIQLAKEKGLIKDHDLYSLPRIRVDNQVIRYLSDHEELRLYAAINQRNSLKHEQRARTIEHRILRRL
ETPAHLESCHFVDHVSPFIILFKETGIRPGTLFNSKWSDVDLDSKFFRIRKSIDKRGISNVIPLNSLALETLKEWRKHGI
HNESASYFKTRMDAWLFPSPANPELQLTTIKKSWDMIIKEAKIENFRLYDLRHDFASKVMMQTGNIYMVSQLLNHQQIET
TKRYAHLMDSSRFEAVNTLDKSRQVGALPDFLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 59078; Mature: 59078

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTLKIAFTNQSISSFLAYLGYRVSSTRKRLKVVQEFEVYLNSQFTFAELAAFHESIES
CCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
WWAGNSKYLAINSHEIAGLSIRLYKSEFTLKNEKLTAIGESLASVYLRQRDTLSAALKTI
HHCCCCEEEEEECCCCCEEEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLGNLTNSNFQVLLKAAQHVKAGNNLGIKIVDKQRGTSASGESSVSLRDFLYGEYVETKR
HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
YENPKTVMVKVDIISRHFGHLLDSPIGNINADLVRQWMKSKERKLTKRQLAAGDSLWTLS
CCCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PSTMKEGICTFRACIQLAKEKGLIKDHDLYSLPRIRVDNQVIRYLSDHEELRLYAAINQR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHEEEEEECCCC
NSLKHEQRARTIEHRILRRLETPAHLESCHFVDHVSPFIILFKETGIRPGTLFNSKWSDV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCCCC
DLDSKFFRIRKSIDKRGISNVIPLNSLALETLKEWRKHGIHNESASYFKTRMDAWLFPSP
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCC
ANPELQLTTIKKSWDMIIKEAKIENFRLYDLRHDFASKVMMQTGNIYMVSQLLNHQQIET
CCCCEEEEEEHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCEEEHHHHHCHHHHHH
TKRYAHLMDSSRFEAVNTLDKSRQVGALPDFLK
HHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHCC
>Mature Secondary Structure
MNKTLKIAFTNQSISSFLAYLGYRVSSTRKRLKVVQEFEVYLNSQFTFAELAAFHESIES
CCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
WWAGNSKYLAINSHEIAGLSIRLYKSEFTLKNEKLTAIGESLASVYLRQRDTLSAALKTI
HHCCCCEEEEEECCCCCEEEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLGNLTNSNFQVLLKAAQHVKAGNNLGIKIVDKQRGTSASGESSVSLRDFLYGEYVETKR
HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
YENPKTVMVKVDIISRHFGHLLDSPIGNINADLVRQWMKSKERKLTKRQLAAGDSLWTLS
CCCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PSTMKEGICTFRACIQLAKEKGLIKDHDLYSLPRIRVDNQVIRYLSDHEELRLYAAINQR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHEEEEEECCCC
NSLKHEQRARTIEHRILRRLETPAHLESCHFVDHVSPFIILFKETGIRPGTLFNSKWSDV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCCCC
DLDSKFFRIRKSIDKRGISNVIPLNSLALETLKEWRKHGIHNESASYFKTRMDAWLFPSP
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCC
ANPELQLTTIKKSWDMIIKEAKIENFRLYDLRHDFASKVMMQTGNIYMVSQLLNHQQIET
CCCCEEEEEEHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCEEEHHHHHCHHHHHH
TKRYAHLMDSSRFEAVNTLDKSRQVGALPDFLK
HHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]