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The map label for this gene is rlpA [C]

Identifier: 126173340

GI number: 126173340

Start: 1266731

End: 1267144

Strand: Direct

Name: rlpA [C]

Synonym: Sbal_1099

Alternate gene names: 126173340

Gene position: 1266731-1267144 (Clockwise)

Preceding gene: 126173339

Following gene: 126173341

Centisome position: 24.71

GC content: 41.06

Gene sequence:

>414_bases
GTGAATGCACTTCAAAACCTAATTAGGCCGTTCAATTTCGTCAAACTATCTGTACTGGCATTGTTAAGTTTTTTGGCTGG
CTGTTCTTCAATGCTGACAGGTGAAAATGGTAACTGGGTTGGATTCACTGAATCGGGTCAGGCTTCCTTTTATGGGGATA
AACATCAAAATAAGCAGACGGCTAGTGGTGAACTTTACAAACATAAATTAAAGACGGCGGCGCATAAAAAGTTACCCTTT
GGTTCGAGCGTTAAGGTCACCAATGTTGATAATGGCAAAAGTGTGATTGTAAAAATCAATGATAGAGGGCCTTTCGTGCG
TGGCCGCATTATTGATCTGTCTAAATCGGCGTTCAGTAGCATAGGCAACACTTCCTCTGGTTTGATTGACGTGAAAATAG
AAGTGATTAAGTAG

Upstream 100 bases:

>100_bases
TTCGAGCTTTGCCATCTAAGGTTGTTCGTTATTTTCCCCGTGACTTTTGCTGAGTCTTTCGCTCGTCAGCAAAGCGTTCA
CTCATTAGAGAGGGTGTCAT

Downstream 100 bases:

>100_bases
CGGCTATTTTGAAAAGGATTATTTCGAAAGGGTTGTCTCGAAAAGCTATCTTGAAACACTGCTTCGCCGCAATTTAATGA
TTGAGTGTATGAAACCGAGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MNALQNLIRPFNFVKLSVLALLSFLAGCSSMLTGENGNWVGFTESGQASFYGDKHQNKQTASGELYKHKLKTAAHKKLPF
GSSVKVTNVDNGKSVIVKINDRGPFVRGRIIDLSKSAFSSIGNTSSGLIDVKIEVIK

Sequences:

>Translated_137_residues
MNALQNLIRPFNFVKLSVLALLSFLAGCSSMLTGENGNWVGFTESGQASFYGDKHQNKQTASGELYKHKLKTAAHKKLPF
GSSVKVTNVDNGKSVIVKINDRGPFVRGRIIDLSKSAFSSIGNTSSGLIDVKIEVIK
>Mature_137_residues
MNALQNLIRPFNFVKLSVLALLSFLAGCSSMLTGENGNWVGFTESGQASFYGDKHQNKQTASGELYKHKLKTAAHKKLPF
GSSVKVTNVDNGKSVIVKINDRGPFVRGRIIDLSKSAFSSIGNTSSGLIDVKIEVIK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=95, Percent_Identity=40, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 14831; Mature: 14831

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALQNLIRPFNFVKLSVLALLSFLAGCSSMLTGENGNWVGFTESGQASFYGDKHQNKQT
CCHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
ASGELYKHKLKTAAHKKLPFGSSVKVTNVDNGKSVIVKINDRGPFVRGRIIDLSKSAFSS
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHH
IGNTSSGLIDVKIEVIK
CCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MNALQNLIRPFNFVKLSVLALLSFLAGCSSMLTGENGNWVGFTESGQASFYGDKHQNKQT
CCHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
ASGELYKHKLKTAAHKKLPFGSSVKVTNVDNGKSVIVKINDRGPFVRGRIIDLSKSAFSS
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHH
IGNTSSGLIDVKIEVIK
CCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]