| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126173321
Identifier: 126173321
GI number: 126173321
Start: 1238815
End: 1240356
Strand: Direct
Name: 126173321
Synonym: Sbal_1078
Alternate gene names: NA
Gene position: 1238815-1240356 (Clockwise)
Preceding gene: 126173320
Following gene: 126173324
Centisome position: 24.16
GC content: 39.23
Gene sequence:
>1542_bases ATGACTTCAAGAAAAGATATAAAGAGTGTCGTCATTGTGGGTGGCGGAACTGCAGGTTGGATTTCTGCCTGTCATTTAGC TAAAAAGTTGAATGCTAGAACACCTCAAATACAAGTTATGTTAGTTGAGTCCCCGAACATTCCTACTATAGGCGTTGGTG AAGGGACAGTGCCTATGTTACGAGAAACATTAAAGTATTTTGGTATTCGAGAAGATGATTTTATTCATCGCTGTGATGTA ACATTTAAACAGAGTGTTAAATTCATTGATTGGAATGAACCAAATTCAGGGGAGTACTATCACCATTTATTTGATTATCC CTACTTTAAAGATTTCACTTCAACTTGGCTCAATAAATCTCTTTCAGATAGAGGCCGCTACGCTGATCTTGTGTCAGTTC AAGGTCATTTAATTGATGCGGGGTTTGGCCCTAAAGCGATGACACAGCCTCAATATCGAGGGGCTATGCATTACGCGTAT CATCTCGATGCTGCAAAGTTTACCAAGTTGTTGACCGAATTTGGTGTTGAACAGTTAGGCGTTAAACATCTGCTTGCAGA AGTTATTGATACAAAAATAGACGCTCAGGGAAATATCTTAGAGTTATATACTGATAACGCTGGTGTATTGACTGCGGACT TGTATGTTGATTGTACTGGATTTAGTGCTCAACTCATTGGCAGCGCATGTAACGTTCCCTTCGTTGATAAGAGTGACATT TTGTTTGTCGACTCAGCATTAGTTGTGCAGCTTCCTTATGAAGATAAATATACGCCTATCCCTTGTTTCACTAAATCAAC AGCACAAGAGGCTGGCTGGATATGGGATATCGGTTTGTCTGAACGTCGTGGTGTTGGTTACGTGTATTCCAGTCAATATT CATCAATAGAGCAAGCTGAGAGTGTATTACGGGAATATCTAGGTAAAGCAGCTGAAGAAATCTCGTTTCGACACATACCT ATGAAGGTGGGGTATAGAGAGAAATCGTGGCAAGGTAACTGTGTTGCGATTGGTTTGTCGAGTGGTTTTGTTGAACCTTT AGAAGCGACTGGTCTTCTTATGTTTGATGCGACAGCCAGAATGTTAGCTGAATGTTTTCCTGCTAATACTGACGTTATGC CACTTGTGGCTAATCGTTATAATCAGCGGGTATCGAATGCTTGGAATCGGGTGATTGACTTTATTAAACTTCACTATGTC ACAGCCAAACGAATGGATACGCCTTTTTGGGTTGATAATAAAAATGAAATAAGTATTCCAGACTCATTAAAAGAACATTT AGAATTGTGGCGCTATCACATACCGACTGCCTATGACTTTACTTCTACGCTAGAATTTTTCAATTTAGAAAACTATTTAT ATGTACTCTATGGCTCAGACTTTGAGTCAAAATTAAAGATGACATTAAATGATGAAGAGGAACGGCTTTTCTCGGAAATG ACCGACAAACTAGACAAGCAGGTTACATTACTCAAATCGCAATTATTACCCCATAGGGAGTTAATTGAACGCATCAAGTT GTATGGCATCCAACTTAATTAA
Upstream 100 bases:
>100_bases TAGCTCCAATTTACAGCCATTTGAACTCATTGTATCAAATTAATCGCCTAGCGAAAGAAGAAATCGAGTTGAGCGCTTAA GTAATCAGCAGGCATAGGTC
Downstream 100 bases:
>100_bases TGGTTTAATTAAACGGCATGTAGAGCACGATTGTTAATCTTGCTCTTTATTGTTTTAAAATTTTTTAATTTTTGCTAAAA ATTCTTGATGTGATAAAGAT
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MTSRKDIKSVVIVGGGTAGWISACHLAKKLNARTPQIQVMLVESPNIPTIGVGEGTVPMLRETLKYFGIREDDFIHRCDV TFKQSVKFIDWNEPNSGEYYHHLFDYPYFKDFTSTWLNKSLSDRGRYADLVSVQGHLIDAGFGPKAMTQPQYRGAMHYAY HLDAAKFTKLLTEFGVEQLGVKHLLAEVIDTKIDAQGNILELYTDNAGVLTADLYVDCTGFSAQLIGSACNVPFVDKSDI LFVDSALVVQLPYEDKYTPIPCFTKSTAQEAGWIWDIGLSERRGVGYVYSSQYSSIEQAESVLREYLGKAAEEISFRHIP MKVGYREKSWQGNCVAIGLSSGFVEPLEATGLLMFDATARMLAECFPANTDVMPLVANRYNQRVSNAWNRVIDFIKLHYV TAKRMDTPFWVDNKNEISIPDSLKEHLELWRYHIPTAYDFTSTLEFFNLENYLYVLYGSDFESKLKMTLNDEEERLFSEM TDKLDKQVTLLKSQLLPHRELIERIKLYGIQLN
Sequences:
>Translated_513_residues MTSRKDIKSVVIVGGGTAGWISACHLAKKLNARTPQIQVMLVESPNIPTIGVGEGTVPMLRETLKYFGIREDDFIHRCDV TFKQSVKFIDWNEPNSGEYYHHLFDYPYFKDFTSTWLNKSLSDRGRYADLVSVQGHLIDAGFGPKAMTQPQYRGAMHYAY HLDAAKFTKLLTEFGVEQLGVKHLLAEVIDTKIDAQGNILELYTDNAGVLTADLYVDCTGFSAQLIGSACNVPFVDKSDI LFVDSALVVQLPYEDKYTPIPCFTKSTAQEAGWIWDIGLSERRGVGYVYSSQYSSIEQAESVLREYLGKAAEEISFRHIP MKVGYREKSWQGNCVAIGLSSGFVEPLEATGLLMFDATARMLAECFPANTDVMPLVANRYNQRVSNAWNRVIDFIKLHYV TAKRMDTPFWVDNKNEISIPDSLKEHLELWRYHIPTAYDFTSTLEFFNLENYLYVLYGSDFESKLKMTLNDEEERLFSEM TDKLDKQVTLLKSQLLPHRELIERIKLYGIQLN >Mature_512_residues TSRKDIKSVVIVGGGTAGWISACHLAKKLNARTPQIQVMLVESPNIPTIGVGEGTVPMLRETLKYFGIREDDFIHRCDVT FKQSVKFIDWNEPNSGEYYHHLFDYPYFKDFTSTWLNKSLSDRGRYADLVSVQGHLIDAGFGPKAMTQPQYRGAMHYAYH LDAAKFTKLLTEFGVEQLGVKHLLAEVIDTKIDAQGNILELYTDNAGVLTADLYVDCTGFSAQLIGSACNVPFVDKSDIL FVDSALVVQLPYEDKYTPIPCFTKSTAQEAGWIWDIGLSERRGVGYVYSSQYSSIEQAESVLREYLGKAAEEISFRHIPM KVGYREKSWQGNCVAIGLSSGFVEPLEATGLLMFDATARMLAECFPANTDVMPLVANRYNQRVSNAWNRVIDFIKLHYVT AKRMDTPFWVDNKNEISIPDSLKEHLELWRYHIPTAYDFTSTLEFFNLENYLYVLYGSDFESKLKMTLNDEEERLFSEMT DKLDKQVTLLKSQLLPHRELIERIKLYGIQLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 58407; Mature: 58276
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRKDIKSVVIVGGGTAGWISACHLAKKLNARTPQIQVMLVESPNIPTIGVGEGTVPML CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCHHHH RETLKYFGIREDDFIHRCDVTFKQSVKFIDWNEPNSGEYYHHLFDYPYFKDFTSTWLNKS HHHHHHCCCCCCCCEEECCCCHHHCEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCC LSDRGRYADLVSVQGHLIDAGFGPKAMTQPQYRGAMHYAYHLDAAKFTKLLTEFGVEQLG HHCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCHHHHH VKHLLAEVIDTKIDAQGNILELYTDNAGVLTADLYVDCTGFSAQLIGSACNVPFVDKSDI HHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCE LFVDSALVVQLPYEDKYTPIPCFTKSTAQEAGWIWDIGLSERRGVGYVYSSQYSSIEQAE EEECCEEEEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEEECCHHCCHHHHH SVLREYLGKAAEEISFRHIPMKVGYREKSWQGNCVAIGLSSGFVEPLEATGLLMFDATAR HHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCEEEEECCCCCCCCHHHCCEEEEHHHHH MLAECFPANTDVMPLVANRYNQRVSNAWNRVIDFIKLHYVTAKRMDTPFWVDNKNEISIP HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC DSLKEHLELWRYHIPTAYDFTSTLEFFNLENYLYVLYGSDFESKLKMTLNDEEERLFSEM HHHHHHHHHHHHCCCCCCCHHHHHHHEECCCEEEEEECCCCCCEEEEEECCHHHHHHHHH TDKLDKQVTLLKSQLLPHRELIERIKLYGIQLN HHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEC >Mature Secondary Structure TSRKDIKSVVIVGGGTAGWISACHLAKKLNARTPQIQVMLVESPNIPTIGVGEGTVPML CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCHHHH RETLKYFGIREDDFIHRCDVTFKQSVKFIDWNEPNSGEYYHHLFDYPYFKDFTSTWLNKS HHHHHHCCCCCCCCEEECCCCHHHCEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCC LSDRGRYADLVSVQGHLIDAGFGPKAMTQPQYRGAMHYAYHLDAAKFTKLLTEFGVEQLG HHCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCHHHHH VKHLLAEVIDTKIDAQGNILELYTDNAGVLTADLYVDCTGFSAQLIGSACNVPFVDKSDI HHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCE LFVDSALVVQLPYEDKYTPIPCFTKSTAQEAGWIWDIGLSERRGVGYVYSSQYSSIEQAE EEECCEEEEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEEECCHHCCHHHHH SVLREYLGKAAEEISFRHIPMKVGYREKSWQGNCVAIGLSSGFVEPLEATGLLMFDATAR HHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCEEEEECCCCCCCCHHHCCEEEEHHHHH MLAECFPANTDVMPLVANRYNQRVSNAWNRVIDFIKLHYVTAKRMDTPFWVDNKNEISIP HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC DSLKEHLELWRYHIPTAYDFTSTLEFFNLENYLYVLYGSDFESKLKMTLNDEEERLFSEM HHHHHHHHHHHHCCCCCCCHHHHHHHEECCCEEEEEECCCCCCEEEEEECCHHHHHHHHH TDKLDKQVTLLKSQLLPHRELIERIKLYGIQLN HHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]