| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
Click here to switch to the map view.
The map label for this gene is 126173135
Identifier: 126173135
GI number: 126173135
Start: 1015475
End: 1018087
Strand: Direct
Name: 126173135
Synonym: Sbal_0890
Alternate gene names: NA
Gene position: 1015475-1018087 (Clockwise)
Preceding gene: 126173134
Following gene: 126173136
Centisome position: 19.8
GC content: 46.54
Gene sequence:
>2613_bases ATGGATAATGTTAATAAGTTAACGGCGATTTCTTTAGCTGTCGCAGCGGCTTTGCCTATGATGGCAAGCGCAGATGTGAT GATTACCGAATATGTTGAAGGTAGCGCAAACAATAAAGCGATTGAACTCTATAACAGCGGCGATACGGCAATTGATCTCG CGGGTTATAAACTGGTTCGTTATAAAGATGGGGCAACTATTGCATCAGATATGGTGGCATTAGATGGCCAATCGATTGCA CCTAAAGCGACAAAAGTCATTTTAAATTCTAGCGCTGTGATCACGCTTGCCCAAGGCGTTGACAGTTACTCTGGCAGTTT AAGTTTTAATGGTGGTGATGCGGTCGCACTCGTTAAAGATGATGCGGTTGTCGATATTATTGGCGATGTGCCAACACCAA CGGGTTGGGGATTAGACGTTACCTTAAAACGTAAATTAGATGCGTTAGTGGCGAATACGGTATTTAACGCCGCCCAGTGG GAACAATTACCTAAAGATACCTTCTCAGGATTAGGTTCACTAGAAACGCCCGCTGAGCCAGAAGTGCCGCTCTTTAGCTG CAGCGGCGCTAAAATAGTGCCGATTTATCAAGTGCAAGGTGCGGGTGAGTCTAGCCCTTACGTTCCAGAAGGTGCATTTG AGTCTGAAGCTGAAGTCACAGTGCGCGGTATAGTGACAGCCCGCGGCGAAAGCTTGTTTAAAGGTTTTTATCTACAAGAA GTGAAAGGTGATAACTCACCGTATACCTCTGATGGTGTGTTTGTATTCTTAGGTGAAGCGGTACCTGAAGCGATTCAACC TGGGGTTGAAGTTTGTGTACAAGGTAAAGTGAAAGAATATTTTGGCTTAACTCAAATCGATATTAAAGCCGATAAGAAAT TTGAAGTCGGCGCTAAGGGTGAAGTCCCAGTTGCTGCGCCTTTCTATGTCGCCGATGGTGAAACCTTAGCCCAAGCATTA GAGCGTTATGAAGGCATGAATGTGGCTTTAGATGCGGGCAGCGATCTTAAGATCAGCCGTACCTTCAGCTATGATTACGC TGGCCGTCGCAACAACATGTTAGTGTCTTATAAAGAACCGCTAATGAAGTCGACACAGCTTTATCCCGCGCTTTCTGCTG AAGCGACTGCGTTAGTTAAATCTAACCTCGAAAACCAACTCTTTATCGAATCTGATTACAAACCTGCCGACGGTGTTATT CCATACTTCCCTGATTTCAATGTGGAAACGGGCTACATCCGTGTGGGCGACCAACTGACGAACCTGCAAGGTGTGATTGG TTACAGCTACGGCGCTTATCGTTTAGTGGCAACTAATACTATTACTGCGGGTGATTTTATCCGTGGTGATGACAGAACTG ATGCCCCAAGCGTCGCAACTAAGGGCGATCTGCGTGTGGCTAGCTTTAACGTGCTGAACTTCTTTAACGATGTTGATGGT GGTGATACCAATCCATCAGGTAGTAACCGTGGCGCGCTAACGCTGGAAGAAATGGTGCTACAACGCACTAAAATCGTTAG CGCTATTACTGCCATGAACGCCGATATCGTCGGTCTGATGGAAATTGCCAACAACGGTTTTGGTGAGAAGAGTGCGATTA AAAACTTAGTCGATGCACTGAACGAGAAGCAAACGCCTGAAAACGCTTATAGCTTTGTTGAAATCACCTACGCCGACAAG TATGACGGCAAGTATTTTGGCACGGATGCTATCACTGTGGGCATGTTATACCGTGGCGGCAAAGTGACCTTAGCTGGTGC TGCTCAAGCTATCGAGACTCCTGAGCAACATGCCAGTGCTGGCAGCGTGACTCGTACTAAAGATGGCAAAACTGAGACAA ATCCAGGTAACGATGCTTACCAACGTCACAGCTTAGCGCAAACCTTTAAAATCCATGATGAGTCGCTGACCGTAGTCGTT AACCATTTGAAATCTAAAGGCTCAGGCTGTTTAGAAGATTGGGCTAACTTTGAAGAGTCAGTCGATCCTGCCGATCAACA GGGCAAGTGTAATGCTTTCCGCGTATCTGCTGCCAAAGTCTTGGGTGAAATGCTAAAAGACGTGAAGGGCGACTTACTGA TCATCGGTGATATGAATGCCTACGGCATGGAAGATCCTATCCGTGTGCTGACCGACTTTGATGCGAGCAAGTCAGATCGT GACATCATGACCGCTTCGTGGACGACGCTCGATGGCAAAGTATTTGAACGCCAAGGTAGCAAGATTGAAAAAGGCTATGG CCTGATCAACTTGAACACGAAAGCCCACGGTGCAGGCACTTACTCTTACAGCTATAACGGCGAGCTAGGCAACTTAGACC ACGCTTTAGCCAATGCTAGCTTAGCCAAACGTTTAGTGGATATTGAAGATTGGCACATCAACTCAGTGGAATCTAACCTG TTTGAATACGGTAAGAAGTTCTCTGGTGATCTGGCTAAATCTGAAAATGCGTTCTCTGCATCGGACCACGATCCTGTGAT CGTTGCCTTAAGCTACCCAGCGCCAGTAGTGCCACCAAAACCTGAGCCAACGCCTAAAGATGATGGCGGTGCTTTGGGTT ATTTAGGTTTAGTACTGATGTCCTTGTTTGGTTTACAACGTCGTCGCCGTTAA
Upstream 100 bases:
>100_bases GTGCGATCTTGCCCTCTTTTTTTAAGCATTCAACTCTGAAATAATCCGCCCGCACGTTAATAGAAGTTAGCGGCAATATT ATAATAATGGGGTTGATGAT
Downstream 100 bases:
>100_bases CCTGTGTAACGGGTGAACTCACAAGTGTTATTTGTGAGCTAGACTGAAACGAAGGGATGGTTCGCCATCCCTTTTTTAGT TGTTTTTTTCAGTTTTTATT
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Endonuclease I; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; Extracellular Ribonuclease/Nuclease Fusion Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; DNA/RNA Non-Specific Endonuclease; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATIASDMVALDGQSIA PKATKVILNSSAVITLAQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGLDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGSLETPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGIVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDTNPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITYADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIETPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGEMLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLVLMSLFGLQRRRR
Sequences:
>Translated_870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATIASDMVALDGQSIA PKATKVILNSSAVITLAQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGLDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGSLETPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGIVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDTNPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITYADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIETPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGEMLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLVLMSLFGLQRRRR >Mature_870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATIASDMVALDGQSIA PKATKVILNSSAVITLAQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGLDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGSLETPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGIVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDTNPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITYADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIETPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGEMLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLVLMSLFGLQRRRR
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93350; Mature: 93350
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVR CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEE YKDGATIASDMVALDGQSIAPKATKVILNSSAVITLAQGVDSYSGSLSFNGGDAVALVKD EECCCCHHHHHEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEECCCCEEEEEEC DAVVDIIGDVPTPTGWGLDVTLKRKLDALVANTVFNAAQWEQLPKDTFSGLGSLETPAEP CCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCC EVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGIVTARGESLFKGFYLQE CCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKG ECCCCCCCCCCCEEEEECCCCCHHHCCCHHEEECCCHHHHHCCEEEEEECCCEEECCCCC EVPVAAPFYVADGETLAQALERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEP CCCEECEEEEECCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECHH LMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVIPYFPDFNVETGYIRVGDQLT HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCHHC NLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG CCCEEEECCCCCEEEEEECEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCC GDTNPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDAL CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHH NEKQTPENAYSFVEITYADKYDGKYFGTDAITVGMLYRGGKVTLAGAAQAIETPEQHASA HCCCCCCCCEEEEEEEEECCCCCEEECCCCEEEEEEEECCEEEEECCHHHHCCCHHHCCC GSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVVNHLKSKGSGCLEDWANFEES CCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHCHHHC VDPADQQGKCNAFRVSAAKVLGEMLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR CCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCC DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANAS CEEEEEEEECCCHHHHHCCCEECCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHH LAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPK HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PEPTPKDDGGALGYLGLVLMSLFGLQRRRR CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVR CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEE YKDGATIASDMVALDGQSIAPKATKVILNSSAVITLAQGVDSYSGSLSFNGGDAVALVKD EECCCCHHHHHEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEECCCCEEEEEEC DAVVDIIGDVPTPTGWGLDVTLKRKLDALVANTVFNAAQWEQLPKDTFSGLGSLETPAEP CCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCC EVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGIVTARGESLFKGFYLQE CCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKG ECCCCCCCCCCCEEEEECCCCCHHHCCCHHEEECCCHHHHHCCEEEEEECCCEEECCCCC EVPVAAPFYVADGETLAQALERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEP CCCEECEEEEECCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECHH LMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVIPYFPDFNVETGYIRVGDQLT HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCHHC NLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG CCCEEEECCCCCEEEEEECEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCC GDTNPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDAL CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHH NEKQTPENAYSFVEITYADKYDGKYFGTDAITVGMLYRGGKVTLAGAAQAIETPEQHASA HCCCCCCCCEEEEEEEEECCCCCEEECCCCEEEEEEEECCEEEEECCHHHHCCCHHHCCC GSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVVNHLKSKGSGCLEDWANFEES CCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHCHHHC VDPADQQGKCNAFRVSAAKVLGEMLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR CCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCC DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANAS CEEEEEEEECCCHHHHHCCCEECCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHH LAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPK HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PEPTPKDDGGALGYLGLVLMSLFGLQRRRR CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA