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The map label for this gene is amiB [H]

Identifier: 126172804

GI number: 126172804

Start: 627488

End: 628909

Strand: Direct

Name: amiB [H]

Synonym: Sbal_0555

Alternate gene names: 126172804

Gene position: 627488-628909 (Clockwise)

Preceding gene: 126172803

Following gene: 126172805

Centisome position: 12.24

GC content: 47.54

Gene sequence:

>1422_bases
ATGATAAAAAATAACCCTTATTTTCAAATTATTATTCTTTCTTTATGTTCTTTTTTATCTGTGGCGGCCCATGCGGCTAA
TCAGTTAGAAAGCGTACGCATTTGGGCTGCGCCTGAGTCGACTCGAATCGTGTTTGACTTAAGCGAAGCGCCTGATTACA
CCTATTTCTCTTTAGATGGTCCTAATCGCTTAGTGGTGGATTTAAAAAAGTCCGCCACTAAAGTTGCGCTTAAAAATCTT
GAAAACAACAGTAAGTTAGTCAAGGGCGTGCGAGTCAGTAAGTCGCCGACTAAGGGTGATTTACGCTTAGTGATCGATTT
AGTGAAGCCACTGAATGCGAGCTTGTTCTCGTTGCCCGTGACCGCGCCCTATGGCAATCGTCTCGTCGTTGATTTAGAAG
ATAAAACCTTAACAACCGCCACCGCAGTCGTGTCATCGACACCCGTTAAAACCGTTACCCAAGCGGCGCAATCATCCCGC
GATATTGTGATTGCTATCGATGCGGGTCATGGCGGCGACGACCCTGGCTCCATTGGCCCTTCTGGCGTTTACGAAAAAAA
GGTTGCCCTAGAAATCGCCAGACGTGTTTCGAGTAAAATCAATGACACCCCCGGCATGCGCGCTGTGATGATCCGCACCG
GCGATTATTTTGTGAATTTGAATAAGCGCTCTGAGTTGGCCCGCAACAGTAAGGCCGATCTACTGATTTCTATCCATGCC
GATGCTTTTACTTCCCCAAATCCTCGCGGCGCCTCTGTGTGGGTATTATCCATGCGTCGGGCTAACAGTGAAATTGGCCG
TTGGTTAGAGCAAAAAGAAAAGCATTCTGAGTTACTTGGCGGCGCGGGTGAGATTATCCAAAACACGGATAATGAACAGT
ATTTAGCCATGACGTTGCTCGATATGTCGATGAACAGTTCGATGGCCATTGGTCATTCAGTCGCTGGCGATATTCTTAAG
GATTTAGGCGGCGTGACTGATTTACACAAGAGTCGCCCCGAGTCTGCGAGTTTAGCCGTGCTGAAATCACCGGATATTCC
TTCAATCTTGGTGGAAACGGGCTTTATCTCGAATCCGAAAGAAGAGCGTTTGCTGTCGAGTAGTCGCCATCAAGAAAATA
TCGCTAATGCTATCTACAAGGGTGTGAGTCGTTACTATCATAATAATCCGCCAGCGGATACCTTGCTTGCCCAGCGAGGC
GGCGCTAGCTCTAGCAGTGCTAAATCGACTAAAGAGAGAACGCCAACCGCTTATGTGGGAAGTTCAACGTCATCGAACGT
CAAACATAAAGTCAGTCGTGGCGAGTCTTTATCGGCCATCGCGCAGCGTTACCGTGTGCATATGTCTAGCATCAAACAAG
CGAATGGGATGAAGTCCGATGTAGTGCAGTTAGGGCAAACATTAGTCATACCCCAGAGTTAA

Upstream 100 bases:

>100_bases
ATATGCATTTAAGTTATCAAAATAGTGGGCGTGAAATACGCATAGAGGCCTTGTCAGAGCCAGGTGAAAAGTTATTAAAA
GCGATAAAATAAAAACTAAA

Downstream 100 bases:

>100_bases
ATAGGAAAGCATGATGGGCATTCAGATCCTGCCACCGCAATTAGCCAACCAAATTGCGGCGGGGGAAGTGGTTGAGAGAC
CCGCTTCCGTAGTCAAAGAA

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MIKNNPYFQIIILSLCSFLSVAAHAANQLESVRIWAAPESTRIVFDLSEAPDYTYFSLDGPNRLVVDLKKSATKVALKNL
ENNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNASLFSLPVTAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQAAQSSR
DIVIAIDAGHGGDDPGSIGPSGVYEKKVALEIARRVSSKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHA
DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILK
DLGGVTDLHKSRPESASLAVLKSPDIPSILVETGFISNPKEERLLSSSRHQENIANAIYKGVSRYYHNNPPADTLLAQRG
GASSSSAKSTKERTPTAYVGSSTSSNVKHKVSRGESLSAIAQRYRVHMSSIKQANGMKSDVVQLGQTLVIPQS

Sequences:

>Translated_473_residues
MIKNNPYFQIIILSLCSFLSVAAHAANQLESVRIWAAPESTRIVFDLSEAPDYTYFSLDGPNRLVVDLKKSATKVALKNL
ENNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNASLFSLPVTAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQAAQSSR
DIVIAIDAGHGGDDPGSIGPSGVYEKKVALEIARRVSSKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHA
DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILK
DLGGVTDLHKSRPESASLAVLKSPDIPSILVETGFISNPKEERLLSSSRHQENIANAIYKGVSRYYHNNPPADTLLAQRG
GASSSSAKSTKERTPTAYVGSSTSSNVKHKVSRGESLSAIAQRYRVHMSSIKQANGMKSDVVQLGQTLVIPQS
>Mature_473_residues
MIKNNPYFQIIILSLCSFLSVAAHAANQLESVRIWAAPESTRIVFDLSEAPDYTYFSLDGPNRLVVDLKKSATKVALKNL
ENNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNASLFSLPVTAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQAAQSSR
DIVIAIDAGHGGDDPGSIGPSGVYEKKVALEIARRVSSKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHA
DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILK
DLGGVTDLHKSRPESASLAVLKSPDIPSILVETGFISNPKEERLLSSSRHQENIANAIYKGVSRYYHNNPPADTLLAQRG
GASSSSAKSTKERTPTAYVGSSTSSNVKHKVSRGESLSAIAQRYRVHMSSIKQANGMKSDVVQLGQTLVIPQS

Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1790611, Length=438, Percent_Identity=38.3561643835616, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI87082163, Length=406, Percent_Identity=34.7290640394089, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI1788776, Length=234, Percent_Identity=40.5982905982906, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508 [H]

Pfam domain/function: PF01520 Amidase_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 51108; Mature: 51108

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNNPYFQIIILSLCSFLSVAAHAANQLESVRIWAAPESTRIVFDLSEAPDYTYFSLDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEEEECC
PNRLVVDLKKSATKVALKNLENNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNASLFSLPV
CCEEEEEEHHHHHHHHHHHCCCCCHHHHCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE
TAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQAAQSSRDIVIAIDAGHGGDDPGSIGP
ECCCCCEEEEEECCCCEEHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
SGVYEKKVALEIARRVSSKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCHHHHHCCCCCCEEEEEEC
DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLL
CCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEE
DMSMNSSMAIGHSVAGDILKDLGGVTDLHKSRPESASLAVLKSPDIPSILVETGFISNPK
HHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCH
EERLLSSSRHQENIANAIYKGVSRYYHNNPPADTLLAQRGGASSSSAKSTKERTPTAYVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHCCCEEEEC
SSTSSNVKHKVSRGESLSAIAQRYRVHMSSIKQANGMKSDVVQLGQTLVIPQS
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCC
>Mature Secondary Structure
MIKNNPYFQIIILSLCSFLSVAAHAANQLESVRIWAAPESTRIVFDLSEAPDYTYFSLDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCEEEEEECC
PNRLVVDLKKSATKVALKNLENNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNASLFSLPV
CCEEEEEEHHHHHHHHHHHCCCCCHHHHCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE
TAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQAAQSSRDIVIAIDAGHGGDDPGSIGP
ECCCCCEEEEEECCCCEEHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
SGVYEKKVALEIARRVSSKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCHHHHHCCCCCCEEEEEEC
DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLL
CCCCCCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEE
DMSMNSSMAIGHSVAGDILKDLGGVTDLHKSRPESASLAVLKSPDIPSILVETGFISNPK
HHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCH
EERLLSSSRHQENIANAIYKGVSRYYHNNPPADTLLAQRGGASSSSAKSTKERTPTAYVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHCCCEEEEC
SSTSSNVKHKVSRGESLSAIAQRYRVHMSSIKQANGMKSDVVQLGQTLVIPQS
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609; 2676972 [H]