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The map label for this gene is yciR [C]

Identifier: 126172753

GI number: 126172753

Start: 569360

End: 571093

Strand: Direct

Name: yciR [C]

Synonym: Sbal_0504

Alternate gene names: 126172753

Gene position: 569360-571093 (Clockwise)

Preceding gene: 126172752

Following gene: 126172754

Centisome position: 11.1

GC content: 45.39

Gene sequence:

>1734_bases
ATGGATTTACTACTGATCGATGATGATGAAGTCGATAGAACGGCAATTATCCGAGCACTTAGGCAGTCAAAGTTGACGTT
TAATGTGATCGAAGCCAATTGTGCATTTGATGGTTTGAATCTTGCCTTAGAACGTCATTTCGACGGCATTCTATTGGATT
ATTTATTGCCCGATGCCAATGGGTTAGAAGTGTTAATTAAGCTCAATGCCATGACGCAAGATCAGACTGTGGTCGTGATG
CTGAGTCGCTATGAAGATGAGAAACTGGCCCAGCGCTGCATTGAATTAGGTGCGCAGGATTTTCTGCTTAAGGATGAGGT
TAACTCGCGGATCTTAACCCGTGCGATTCGCTATGCGAAACAAAGATCTTCAATGGCATTGGCGTTACGGAATAGCCATC
AAAAACTAAAAGAACTGGCCGAGCACGACTCGCTCACTAAGCTGGTTAATCGCTATGGTTTTGAACTGTGTCTTAATCGA
GCGATCGCAAGGGCGAAACGCTGTCACGACTATTTAGCGGTTATCTTACTGGATCTCGATGATTTTAAAGCGATCAATGA
CACTTTAGGCCACCAAACGGGTGATGTGCTGTTACTCAAAGTTGCGGCTCGATTAAGTGAGGTGCTGCGAGATGGCGACA
TTATTGCCCGTTTAGGCGGTGACGAATTTGTCGTCCTGGTGACAGATAACGATTATAAATATTTCCCCATGATAGTGGCC
AATCGACTGCTCAAAGTCTTTGAGGATGAATTTTGCCTCGGTGATAACGATGTGCTTATCGGTGCCAGTATCGGTGTGGC
TTTTTATAATGAAGCGGCTTCGAACAGTTCTGAGCTGATGAAATGCGCCGATATCGCCATGTATCGCGCTAAAAAGATGG
GCCGAAACCAGATCCAGTTTTATTCCGAAGCCTTAGACAAAGAGGTGCGCTACCGTAATCATATCGAGTCAAGTTTACGT
ATGGCCTTAAAAAGAAATGAATTTAAGGTCCATTATCAAGCACAGGTTAATGCGAAAACCCATCAGCTGGTGGGGATGGA
AGCCCTTATCCGATGGCAGCACCCAGTGGATGGTATTATCGCTCCAGATCAATTTTTGCCCATAGCCGAAGAAATTGGAT
TAATGGATGACATTGATGATTGGGTGCTTGAACAAGCCTGCACCCAGGCACAGGTTTGGTTAACCCAATTACAGCCCCTA
GGCCAAGAATTCACTATCGCGGTTAACCTCTCTGCATCTCAAATCGGAAATGAGAACCTGTTTGATAAAATCGTGCATAC
ACTGACGAAGACAGGCCTGCCTGCTGGAGCATTAGAGCTTGAAATTACAGAAAATTGCCTTATTGAAGATCCCCATGAAC
ATGCCAAAGTGCTCGATAGAATCGCCGGATTAGGGGTGCGTTTTGCCCTCGATGACTTCGGGACGGGTTTTTCGTCATTA
GAACACATCAAACTGTTTCCGATCAGCGTGCTAAAAATCGATAAAAGCTTTGTCGCTTCCTACGATAAGGATGAAAAAGA
CACCCGATTGCTCGCTGCTTTACTCAACTTTGCCCATGGGTTTAATGTTATTTCTGTGGCGGAGGGGGTTGAAACGTTTG
AGCAAGCAGAGTTTTGTACTGCTCGCCATTGCACTGTTTTACAAGGGTATTTATTCTCGCGCCCCTTAGATGCCGCGGCG
TTTGAGGCCAAGTATATTCTGCCACTAATAACCCAAACTCAGCTCCCAGTGTGA

Upstream 100 bases:

>100_bases
CATGGTTAAAACTGACATAAAGGACGGTTTTAACAATATTTTTAATATGCTTGAAGGTTACTGGCGAATAGTCGAGCTCC
CATCCGCATAAGGTGAGTAT

Downstream 100 bases:

>100_bases
GAGGTCTCGAACTATTTCAATAGCATAGTGATTTCGTCTGGTGAGGAATATTTTCTTGCTTTACACTGAGCAATAGACAA
ATATCAGCCCCTTTTCTGTC

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLITQTQLPV

Sequences:

>Translated_577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLITQTQLPV
>Mature_577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLITQTQLPV

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=33.7155963302752, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87081921, Length=463, Percent_Identity=32.829373650108, Blast_Score=245, Evalue=5e-66,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=30.316742081448, Blast_Score=198, Evalue=8e-52,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=34, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=34.6613545816733, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=32.8063241106719, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=34.1176470588235, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1787055, Length=442, Percent_Identity=25.3393665158371, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=27.9835390946502, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788381, Length=407, Percent_Identity=26.044226044226, Blast_Score=119, Evalue=8e-28,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=28.8065843621399, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI145693134, Length=207, Percent_Identity=32.8502415458937, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=430, Percent_Identity=24.6511627906977, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=33.5260115606936, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=33.1491712707182, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=36.3095238095238, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=209, Percent_Identity=32.0574162679426, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=201, Percent_Identity=29.8507462686567, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=35.5421686746988, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=34.5238095238095, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=209, Percent_Identity=30.622009569378, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=32.1212121212121, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=34.5911949685535, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=98, Percent_Identity=34.6938775510204, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 64954; Mature: 64954

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH
DFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
APDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPLGQEFTIAVNLSASQIGNENL
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHCCCCHH
FDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCT
CCEEEEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHCTVLQGYLFSRPLDAAAFEAKYILPLITQTQLPV
HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH
DFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
APDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPLGQEFTIAVNLSASQIGNENL
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHCCCCHH
FDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCT
CCEEEEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHCTVLQGYLFSRPLDAAAFEAKYILPLITQTQLPV
HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]