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The map label for this gene is yijC [C]

Identifier: 125625271

GI number: 125625271

Start: 2474592

End: 2475206

Strand: Direct

Name: yijC [C]

Synonym: llmg_2517

Alternate gene names: 125625271

Gene position: 2474592-2475206 (Clockwise)

Preceding gene: 125625264

Following gene: 125625274

Centisome position: 97.83

GC content: 33.17

Gene sequence:

>615_bases
ATGGTTAAATCAGATGATTTGCGCGTAAAACGAACAAGAAAATTGATAAGTCAGGCTTTTTTTACTTTGTTACGCAAGAA
AAAATTTGAAAAAATTTCAATTCAAGAAATTGCCGATTCAGCCATGATTAATCGAGCAACTTTTTATGCTCATTATGCTG
ACAAACAAGATTTATATGATAGTTTGATTGACCAATTTTTGGCTAGTTTTACTGGTATTTTGGATGAACAAAATTTGGTC
GATGGAAATAATGTTCACGTCAAGGAAATTGAAACTGTCCTGAGTCGCTTTTACGAATTTGTTCAGGATAAACCAGAGGT
TGCACAAATGATTACTGACAGAGCACATGATCAACGTTTGAAAAATAGATTTCTGGAAATTTTATCTGAGCGTTATACTG
AGTTATTTGAGAAATTGGAAGTTAGAGAAAAAGATGTTGTAGTTCCTAATGACTTCGTGATTTCTTATATTAGTTCAATT
TTGGTCGGAACATTAGATTGGTGGGTCTCTTCTTCGACACAAATGTCCGCTCGGGATTTTGCTCATCTCATCATCAAATT
AATTTCTAATGGTCATCTGACTGTGCTTGGAGTTAATATTAATCGTGAAAATTAA

Upstream 100 bases:

>100_bases
CTTTTTTTTGATTATAATGGAGTAATCGCATGATGTGAAAAATTAGACAAAGCAGATTACATAATTTCTTTGCCCACTAG
ATAATGGAAAGATGGTTCTT

Downstream 100 bases:

>100_bases
AAAAGTTACTGACGAAAAATTCTGTCAGAGGATAGCCGTTGCACTTTAGCTTACGGATACCTTCGAATTTTCATCAGTAA
CTTTTATTTTTTTAAGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; TetR Family Transcriptional Regulator; Transcriptional Regulator TetR-Related Family; AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr Family; AraC Family Transcriptional Regulator; Transcription Regulator; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MVKSDDLRVKRTRKLISQAFFTLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYDSLIDQFLASFTGILDEQNLV
DGNNVHVKEIETVLSRFYEFVQDKPEVAQMITDRAHDQRLKNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSI
LVGTLDWWVSSSTQMSARDFAHLIIKLISNGHLTVLGVNINREN

Sequences:

>Translated_204_residues
MVKSDDLRVKRTRKLISQAFFTLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYDSLIDQFLASFTGILDEQNLV
DGNNVHVKEIETVLSRFYEFVQDKPEVAQMITDRAHDQRLKNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSI
LVGTLDWWVSSSTQMSARDFAHLIIKLISNGHLTVLGVNINREN
>Mature_204_residues
MVKSDDLRVKRTRKLISQAFFTLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYDSLIDQFLASFTGILDEQNLV
DGNNVHVKEIETVLSRFYEFVQDKPEVAQMITDRAHDQRLKNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSI
LVGTLDWWVSSSTQMSARDFAHLIIKLISNGHLTVLGVNINREN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23765; Mature: 23765

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSDDLRVKRTRKLISQAFFTLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SLIDQFLASFTGILDEQNLVDGNNVHVKEIETVLSRFYEFVQDKPEVAQMITDRAHDQRL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSILVGTLDWWVSSSTQMSARDF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AHLIIKLISNGHLTVLGVNINREN
HHHHHHHHCCCCEEEEEEEECCCC
>Mature Secondary Structure
MVKSDDLRVKRTRKLISQAFFTLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SLIDQFLASFTGILDEQNLVDGNNVHVKEIETVLSRFYEFVQDKPEVAQMITDRAHDQRL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSILVGTLDWWVSSSTQMSARDF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AHLIIKLISNGHLTVLGVNINREN
HHHHHHHHCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA