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The map label for this gene is ydeP [H]

Identifier: 125625210

GI number: 125625210

Start: 2405452

End: 2405784

Strand: Direct

Name: ydeP [H]

Synonym: llmg_2453

Alternate gene names: 125625210

Gene position: 2405452-2405784 (Clockwise)

Preceding gene: 125625206

Following gene: 125625211

Centisome position: 95.1

GC content: 43.24

Gene sequence:

>333_bases
TTGAATAAAATTTCTGAACTTCCCGATTGCCCTGTTGAAACAGCACTTGTTTTGATGGGTGACCGCTGGAAAATGCTCAT
TGTCCGTGATTTATTAGAGCGAACCATGCGCTTTGGCGAACTTCAACGTTCAGTTGGACATATTTCACAAAAAGTTTTGA
CCCAACATTTGCGTGCCCTCGAAGAAAGCGGGCTGGTTCATCGTGAAGTCTATGCAGAAGTGCCTCCTCGTGTTGAATAT
TCGCTGACAGAACTTGGAAGAACCCTCAAACCAATCCATGATACGATGGCAGCTTGGGGAAATCTTTATAAAAAAGAAAT
CAGCAAAGCTTAG

Upstream 100 bases:

>100_bases
TAACATTGTACTACCAATGTGTAAAGTAAGCACTTAAAAGTAAGATACTATCCTTTTGGATACTATTGTATAATAACAAC
GATTATGAGGTGATAAAAAA

Downstream 100 bases:

>100_bases
AGATAAAAATTACTGACAGGAAATTCTGTCAGTAATTTTTGTTTAATTATGTATAAATTTCTGCACACCTTGACCTAAAA
AAGAATTATAATAAAAGTAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MNKISELPDCPVETALVLMGDRWKMLIVRDLLERTMRFGELQRSVGHISQKVLTQHLRALEESGLVHREVYAEVPPRVEY
SLTELGRTLKPIHDTMAAWGNLYKKEISKA

Sequences:

>Translated_110_residues
MNKISELPDCPVETALVLMGDRWKMLIVRDLLERTMRFGELQRSVGHISQKVLTQHLRALEESGLVHREVYAEVPPRVEY
SLTELGRTLKPIHDTMAAWGNLYKKEISKA
>Mature_110_residues
MNKISELPDCPVETALVLMGDRWKMLIVRDLLERTMRFGELQRSVGHISQKVLTQHLRALEESGLVHREVYAEVPPRVEY
SLTELGRTLKPIHDTMAAWGNLYKKEISKA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=98, Percent_Identity=41.8367346938776, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12670; Mature: 12670

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKISELPDCPVETALVLMGDRWKMLIVRDLLERTMRFGELQRSVGHISQKVLTQHLRAL
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EESGLVHREVYAEVPPRVEYSLTELGRTLKPIHDTMAAWGNLYKKEISKA
HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKISELPDCPVETALVLMGDRWKMLIVRDLLERTMRFGELQRSVGHISQKVLTQHLRAL
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EESGLVHREVYAEVPPRVEYSLTELGRTLKPIHDTMAAWGNLYKKEISKA
HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]