Click here to switch to the map view.

The map label for this gene is ybhE [C]

Identifier: 125625189

GI number: 125625189

Start: 2381785

End: 2382810

Strand: Direct

Name: ybhE [C]

Synonym: llmg_2431

Alternate gene names: 125625189

Gene position: 2381785-2382810 (Clockwise)

Preceding gene: 125625184

Following gene: 125625190

Centisome position: 94.16

GC content: 38.6

Gene sequence:

>1026_bases
ATGAAAGAAAAAATCCTTTTAGGCGGTTATACTAAACGTGTATCTAAAGGCGTTTACAGTGTTCTATTAGATAGCAAGAA
AGCTGAATTGTCGGCTTTAACTGAAGTTGCAGCGGTTCAAAATCCAACTTATATCACTCTTGATCAAAAAGGGCACCTCT
ACACTTGTGCTGCTGATGGAAATGGTGGTGGAATTGCTGCCTTTGATTTCGATGGTCAAAATACAACTCACCTAGGGAAT
GTAACGAGTACTGGAGCCCCTTTGTGTTATGTGGCTGTTGATGAAGCACGTCAACTCGTTTATGGTGCCAACTATCACTT
GGGTGAAGTTCGTGTGTACAAAATTCAAGCTGATGGTTCCCTTAGATTAACCGATACAGTTAAACATAATGGTTCTGGCC
CTCGACCTGAGCAAGCAAGTTCTCATGTCCATTACTCTGATTTAACTCCAGATGGTCGTCTTGTTACTTGTGATTTAGGT
ACAGATGAAGTGACTGTTTACGATGTTATTGGTGAAGGTAAACTCAATATCGTTACGATTTATCGTGCCGAAAAAGGAAT
GGGAGCTCGTCACATCAGCTTCCATCCTAATGGAAAAATTGCTTATCTCGTCGGAGAATTAAATTCAACTATTGAAGTTC
TAAGCTATAATGAAGAAAAAGGACGATTCGCTCGTCTTCAAACAATCAGTACTTTACCTGAAGACTATCACGGAGCCAAT
GGAGTAGCTGCTATTCGAATTTCTTCTGATGGTAAGTTCCTCTATGCTTCTAATCGTGGGCACGACTCTTTAGCAATTTA
CAAGGTAAGTCCTCTCGGAACAAAATTAGAATCTATTGGTTGGACAAAGACTGAAGGTCATATTCCACGCGATTTTAATT
TTAATAAAACCGAAGATTATATCATTGTCGCTCATCAAGAATCTGATAATTTAACTCTTTTCTTGAGAGATAAAAATACA
GGGTCATTAACGTTAGAACAAAAAGACTTTTACGCTCCTGAAATTACTTGTGTTTTACCTTTGTAA

Upstream 100 bases:

>100_bases
TTACATTTTTTTCTAAGAATAAAATTAATATTTTTGCTGAAAACGCTTTTTTTGTGATAAAATAATTATAGTAAATAAAA
TAGTTTGTGAGGAGAGAAAT

Downstream 100 bases:

>100_bases
AAACTAAACTTTAGTAAATCTTGCTTTTGTTTTTTCACAAAGTTTTACTAAATCAGACAAAAAAATATTGCCAAATCTTT
AAAAGGATTGGCAATATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORFB

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKEKILLGGYTKRVSKGVYSVLLDSKKAELSALTEVAAVQNPTYITLDQKGHLYTCAADGNGGGIAAFDFDGQNTTHLGN
VTSTGAPLCYVAVDEARQLVYGANYHLGEVRVYKIQADGSLRLTDTVKHNGSGPRPEQASSHVHYSDLTPDGRLVTCDLG
TDEVTVYDVIGEGKLNIVTIYRAEKGMGARHISFHPNGKIAYLVGELNSTIEVLSYNEEKGRFARLQTISTLPEDYHGAN
GVAAIRISSDGKFLYASNRGHDSLAIYKVSPLGTKLESIGWTKTEGHIPRDFNFNKTEDYIIVAHQESDNLTLFLRDKNT
GSLTLEQKDFYAPEITCVLPL

Sequences:

>Translated_341_residues
MKEKILLGGYTKRVSKGVYSVLLDSKKAELSALTEVAAVQNPTYITLDQKGHLYTCAADGNGGGIAAFDFDGQNTTHLGN
VTSTGAPLCYVAVDEARQLVYGANYHLGEVRVYKIQADGSLRLTDTVKHNGSGPRPEQASSHVHYSDLTPDGRLVTCDLG
TDEVTVYDVIGEGKLNIVTIYRAEKGMGARHISFHPNGKIAYLVGELNSTIEVLSYNEEKGRFARLQTISTLPEDYHGAN
GVAAIRISSDGKFLYASNRGHDSLAIYKVSPLGTKLESIGWTKTEGHIPRDFNFNKTEDYIIVAHQESDNLTLFLRDKNT
GSLTLEQKDFYAPEITCVLPL
>Mature_341_residues
MKEKILLGGYTKRVSKGVYSVLLDSKKAELSALTEVAAVQNPTYITLDQKGHLYTCAADGNGGGIAAFDFDGQNTTHLGN
VTSTGAPLCYVAVDEARQLVYGANYHLGEVRVYKIQADGSLRLTDTVKHNGSGPRPEQASSHVHYSDLTPDGRLVTCDLG
TDEVTVYDVIGEGKLNIVTIYRAEKGMGARHISFHPNGKIAYLVGELNSTIEVLSYNEEKGRFARLQTISTLPEDYHGAN
GVAAIRISSDGKFLYASNRGHDSLAIYKVSPLGTKLESIGWTKTEGHIPRDFNFNKTEDYIIVAHQESDNLTLFLRDKNT
GSLTLEQKDFYAPEITCVLPL

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family

Homologues:

Organism=Escherichia coli, GI1786983, Length=237, Percent_Identity=28.6919831223629, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2431_LACLM (O86281)

Other databases:

- EMBL:   AJ001007
- EMBL:   AM406671
- RefSeq:   YP_001033672.1
- ProteinModelPortal:   O86281
- STRING:   O86281
- GeneID:   4798780
- GenomeReviews:   AM406671_GR
- KEGG:   llm:llmg_2431
- eggNOG:   COG2706
- HOGENOM:   HBG741123
- OMA:   QEKPHAH
- ProtClustDB:   CLSK698137
- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943
- Gene3D:   G3DSA:2.130.10.10

Pfam domain/function: PF10282 DUF2394; SSF51004 Cyt_cd1_haem_C

EC number: NA

Molecular weight: Translated: 37265; Mature: 37265

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKILLGGYTKRVSKGVYSVLLDSKKAELSALTEVAAVQNPTYITLDQKGHLYTCAADG
CCCEEEECCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECC
NGGGIAAFDFDGQNTTHLGNVTSTGAPLCYVAVDEARQLVYGANYHLGEVRVYKIQADGS
CCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCEEEECCCEEECCEEEEEEECCCC
LRLTDTVKHNGSGPRPEQASSHVHYSDLTPDGRLVTCDLGTDEVTVYDVIGEGKLNIVTI
EEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE
YRAEKGMGARHISFHPNGKIAYLVGELNSTIEVLSYNEEKGRFARLQTISTLPEDYHGAN
EEECCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEHHCCCHHHCCCC
GVAAIRISSDGKFLYASNRGHDSLAIYKVSPLGTKLESIGWTKTEGHIPRDFNFNKTEDY
CEEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCE
IIVAHQESDNLTLFLRDKNTGSLTLEQKDFYAPEITCVLPL
EEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECC
>Mature Secondary Structure
MKEKILLGGYTKRVSKGVYSVLLDSKKAELSALTEVAAVQNPTYITLDQKGHLYTCAADG
CCCEEEECCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECC
NGGGIAAFDFDGQNTTHLGNVTSTGAPLCYVAVDEARQLVYGANYHLGEVRVYKIQADGS
CCCEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCEEEECCCEEECCEEEEEEECCCC
LRLTDTVKHNGSGPRPEQASSHVHYSDLTPDGRLVTCDLGTDEVTVYDVIGEGKLNIVTI
EEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE
YRAEKGMGARHISFHPNGKIAYLVGELNSTIEVLSYNEEKGRFARLQTISTLPEDYHGAN
EEECCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEHHCCCHHHCCCC
GVAAIRISSDGKFLYASNRGHDSLAIYKVSPLGTKLESIGWTKTEGHIPRDFNFNKTEDY
CEEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCE
IIVAHQESDNLTLFLRDKNTGSLTLEQKDFYAPEITCVLPL
EEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9620952