| Definition | Lactococcus lactis subsp. cremoris MG1363, complete genome. |
|---|---|
| Accession | NC_009004 |
| Length | 2,529,478 |
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The map label for this gene is typA [H]
Identifier: 125625056
GI number: 125625056
Start: 2245314
End: 2247155
Strand: Reverse
Name: typA [H]
Synonym: llmg_2292
Alternate gene names: 125625056
Gene position: 2247155-2245314 (Counterclockwise)
Preceding gene: 125625057
Following gene: 125625055
Centisome position: 88.84
GC content: 40.07
Gene sequence:
>1842_bases ATGATAAAATTGACTAAATTACGCGAAGATATTAGAAACGTCGCTATTATTGCCCACGTTGACCATGGTAAAACTACATT GGTTGACGAACTCTTAAAACAATCTCAAACGTTGGATGCTCGTAAAGAATTGGCTGAACGTGCGATGGACTCAAATGCAC TTGAGCAAGAACGTGGGATTACTATCCTTGCCAAAAATACAGCAGTTGAATATAACGGAACTCGTATCAACATCTTGGAC ACACCAGGTCACGCGGACTTCGGTGGAGAAGTTGAACGTATTATGAAAATGGTTGATGGAGTTGTCCTCGTTGTCGATGC TTATGAAGGAACAATGCCTCAAACACGTTTTGTTTTGAAAAAAGCTTTGGAACAAAACTTGACGCCTATCGTTGTTGTTA ATAAGATTGACAAACCATCTGCTCGTCCAGCTGAAGTTGTTGATGAAGTTCTTGAACTTTTCATCGAACTTGGTGCTGAT GACGAACAATTGGATTTCCCAGTTGTTTACGCTTCAGCAATCAACGGTTCTTCATCAATGTCTGATAATCCAGCTGATCA AGAACACACAATGGCAAATATTTTTGATACAATCATCGACCATATCCCTGGTCCAGTTGATAACTCTGATGAACCTTTGC AATTCCAAGTTTCACTTTTGGACTACAATGACTATGTTGGACGTATCGGTATCGGTCGTGTTTTCCGTGGGACAATCAAA GTTGGAGACAGCGTTACTTTGTCTAAACTTGATGGAACAACTAAAAACTTCCGCGTAACTAAACTTTTTGGTTTCTTCGG TCTTGACCGTCAAGAAATCCAAGAAGCAAAAGCTGGTGATTTGATTGCTTTATCTGGTATGGAAGATATCTTCGTTGGTG AAACTGTTACACCTTCAGACCACGTAGAACCATTGCCAATCTTGCACATTGACGAACCTACTTTGCAAATGACTTTCCTT GCTAATAACTCTCCTTTCGCTGGTCGCGAAGGAAAATGGGTAACATCACGTAAAGTTGAAGAACGTTTGGTTTCTGAATT GCAAACTGACGTTTCACTTCGTGTTGAAAACACTGAATCTCCTGATAAATGGGTTGTTTCTGGTCGTGGTGAATTGCATT TGTCAATCCTTATTGAAACAATGCGTCGTGAAGGATATGAACTTCAAGTTTCACGTCCTGAAGTTATCATCAAAGAAGTT GATGGTGTAGCTTGCGAACCATTTGAACGTGTTCAAATCGATACTCCTGAAGAATACCAAGGTTCAATTATCCAAGCGCT CTCTGAACGTAAAGGGGACATGCTTGATATGCAAGTTACTGGTAACGGTCAAGCACGTTTGATTTTCCTTGTTCCTGCAC GTGGTTTGATTGGATTCACAACAGAATTCATGTCAATGACTCGTGGATACGGAATCATGAACCATACATTCGACCAATAT CTTCCAGCTGTTAAGGGAGAAATCGGTGGACGTCACCGTGGTTCTTTGATTTCTATGGACTCTGGTCAAGTAACTCCATA TGCTATGGGTTATGTTCAAGAACGTGGACAACTTTTTGTTGACGCTGGTACTGAAGTTTATGGTGGGATGATTGTTGGTG AACACAGCCGTGATAACGATTTGACTGTAAACATCACTAAAATGAAACAACAAACAAACGTCCGTTCTTCAAATAAAGAC TCTACATCTGTTTTGAACACTCCAAAAATCCTTTCACTTGAAGAATCTTTGGAATTCCTCGGTGATGATGATTACTTGGA AGTAACTCCTGAATCAATCCGCTTGCGTAAACAAATCTTGGACAAAGCAATGCGTGAAAAATCAACTAAGAAGAAAAAAT AA
Upstream 100 bases:
>100_bases TTTTTCAACTAAAAAAATCTTTGCTAGGCTTGTAAACGTGTGCATTTACAGCTTTTAAAAAAGTGTGCTATAATGGGTTA GATATATACGAAAGTAAGGT
Downstream 100 bases:
>100_bases AGATTTATAAAAAGTACTGAAATTAATTTTTTCGATTATAAAAAGACAAGTAATTTGAGCATTTTTGCTTGAGAACTTGT CTAGTTTGGGAAGGAGAAAG
Product: GTP-binding protein TypA/BipA-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MIKLTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINILD TPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIK VGDSVTLSKLDGTTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFL ANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEV DGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQVTGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQY LPAVKGEIGGRHRGSLISMDSGQVTPYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKMKQQTNVRSSNKD STSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKSTKKKK
Sequences:
>Translated_613_residues MIKLTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINILD TPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIK VGDSVTLSKLDGTTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFL ANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEV DGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQVTGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQY LPAVKGEIGGRHRGSLISMDSGQVTPYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKMKQQTNVRSSNKD STSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKSTKKKK >Mature_613_residues MIKLTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINILD TPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIK VGDSVTLSKLDGTTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFL ANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEV DGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQVTGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQY LPAVKGEIGGRHRGSLISMDSGQVTPYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKMKQQTNVRSSNKD STSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKSTKKKK
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=539, Percent_Identity=27.2727272727273, Blast_Score=147, Evalue=4e-35, Organism=Homo sapiens, GI94966754, Length=142, Percent_Identity=43.6619718309859, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI18390331, Length=147, Percent_Identity=38.0952380952381, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI4503483, Length=147, Percent_Identity=34.6938775510204, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI25306283, Length=168, Percent_Identity=36.3095238095238, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI19923640, Length=168, Percent_Identity=36.3095238095238, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI25306287, Length=471, Percent_Identity=24.6284501061571, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310132016, Length=120, Percent_Identity=40.8333333333333, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI310110807, Length=120, Percent_Identity=40.8333333333333, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI310123363, Length=120, Percent_Identity=40.8333333333333, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI34147630, Length=275, Percent_Identity=31.2727272727273, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI217272892, Length=191, Percent_Identity=35.0785340314136, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI217272894, Length=191, Percent_Identity=35.0785340314136, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI94966752, Length=138, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI53729339, Length=168, Percent_Identity=33.9285714285714, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI53729337, Length=168, Percent_Identity=33.9285714285714, Blast_Score=78, Evalue=2e-14, Organism=Escherichia coli, GI48994988, Length=605, Percent_Identity=54.3801652892562, Blast_Score=669, Evalue=0.0, Organism=Escherichia coli, GI1788922, Length=511, Percent_Identity=28.1800391389432, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI1789738, Length=148, Percent_Identity=40.5405405405405, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1790835, Length=145, Percent_Identity=31.7241379310345, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1789737, Length=331, Percent_Identity=28.7009063444109, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1790412, Length=335, Percent_Identity=30.1492537313433, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1789559, Length=142, Percent_Identity=38.7323943661972, Blast_Score=66, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17557151, Length=525, Percent_Identity=24.952380952381, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17556745, Length=451, Percent_Identity=25.0554323725055, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17533571, Length=173, Percent_Identity=37.5722543352601, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=38.8059701492537, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=38.8059701492537, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17506493, Length=161, Percent_Identity=34.7826086956522, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17552882, Length=134, Percent_Identity=36.5671641791045, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17556456, Length=300, Percent_Identity=29.3333333333333, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994658, Length=151, Percent_Identity=39.7350993377483, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI25141371, Length=274, Percent_Identity=26.6423357664234, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323320, Length=507, Percent_Identity=28.7968441814596, Blast_Score=147, Evalue=7e-36, Organism=Saccharomyces cerevisiae, GI6324707, Length=147, Percent_Identity=40.1360544217687, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=147, Percent_Identity=40.1360544217687, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6324761, Length=273, Percent_Identity=31.1355311355311, Blast_Score=100, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6323098, Length=149, Percent_Identity=35.5704697986577, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=142, Percent_Identity=38.0281690140845, Blast_Score=90, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6322359, Length=148, Percent_Identity=34.4594594594595, Blast_Score=84, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6324550, Length=170, Percent_Identity=32.9411764705882, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6325337, Length=279, Percent_Identity=27.2401433691756, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319594, Length=279, Percent_Identity=27.2401433691756, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI78706572, Length=518, Percent_Identity=25.2895752895753, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI28574573, Length=147, Percent_Identity=38.7755102040816, Blast_Score=109, Evalue=5e-24, Organism=Drosophila melanogaster, GI24582462, Length=203, Percent_Identity=33.4975369458128, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24585711, Length=153, Percent_Identity=36.6013071895425, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24585713, Length=153, Percent_Identity=36.6013071895425, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24585709, Length=153, Percent_Identity=36.6013071895425, Blast_Score=103, Evalue=5e-22, Organism=Drosophila melanogaster, GI21357743, Length=188, Percent_Identity=37.2340425531915, Blast_Score=102, Evalue=6e-22, Organism=Drosophila melanogaster, GI281363316, Length=274, Percent_Identity=32.1167883211679, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI17864358, Length=274, Percent_Identity=32.1167883211679, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI28572034, Length=282, Percent_Identity=30.8510638297872, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI221458488, Length=133, Percent_Identity=42.1052631578947, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI19921738, Length=276, Percent_Identity=28.9855072463768, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 68254; Mature: 68254
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKLTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI CCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHCCE TILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLK EEEEECEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHH KALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSM HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC SDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIK CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE VGDSVTLSKLDGTTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSD CCCCEEEEECCCCCCCEEEEEEEHHHCCCHHHHHHCCCCCEEEECCCCCEEECCCCCCCC HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES CCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEEECCCC PDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEVDGVACEPFERVQIDTPEEYQ CCCEEEECCCCEEHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCHHCEECCCCHHHH GSIIQALSERKGDMLDMQVTGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQY HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHCCHHHH LPAVKGEIGGRHRGSLISMDSGQVTPYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDND HHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHCCEEEECCCCCCC LTVNITKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQIL EEEEEEEHHHHHCCCCCCCCCCHHCCCCCEEEHHHHHHHHCCCCEEEECHHHHHHHHHHH DKAMREKSTKKKK HHHHHHHHHCCCC >Mature Secondary Structure MIKLTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI CCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHCCE TILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLK EEEEECEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHH KALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSM HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC SDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIK CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE VGDSVTLSKLDGTTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSD CCCCEEEEECCCCCCCEEEEEEEHHHCCCHHHHHHCCCCCEEEECCCCCEEECCCCCCCC HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES CCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEEECCCC PDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEVDGVACEPFERVQIDTPEEYQ CCCEEEECCCCEEHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCHHCEECCCCHHHH GSIIQALSERKGDMLDMQVTGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQY HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHCCHHHH LPAVKGEIGGRHRGSLISMDSGQVTPYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDND HHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHCCEEEECCCCCCC LTVNITKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQIL EEEEEEEHHHHHCCCCCCCCCCHHCCCCCEEEHHHHHHHHCCCCEEEECHHHHHHHHHHH DKAMREKSTKKKK HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]