Click here to switch to the map view.

The map label for this gene is ps519

Identifier: 125625015

GI number: 125625015

Start: 2212957

End: 2213397

Strand: Reverse

Name: ps519

Synonym: llmg_2250

Alternate gene names: NA

Gene position: 2213397-2212957 (Counterclockwise)

Preceding gene: 125625016

Following gene: 125625014

Centisome position: 87.5

GC content: 39.0

Gene sequence:

>441_bases
ATGACACCGAAACAGCGTAAATTTTGCGATGAATACATAAAAACAGGAAACGCCACGCAGTCGGCTATTAATGCAGGGTA
TAGCCAAAAAACAGCGAAGTCGATAGGAGCAGAAAACCTCACTAAACCTGACATAAAAAAATACATCGATAGCAAGTTAA
AAGACATTTCAAACAATGCCATAGCGACCGCAGAAGAGACTTTAACCATATTAACGCAGATAGTACGCGGAGAGCATACA
GAGCAAGTGATAACAGCAGAGGGCGATGTCATAGACAAACACCCTGACACTAATCAAATCATTAGAGCAAGTTCTGAAAT
CTTAAAACGTTACCCACTTGTACAAGATATTAATATCAACGGAAACTTGAGTGTTAGCAACCCTTTTGAAAATCTAACAG
AGGAAGAACTTAGAATCTTAGCAAGCAGAGATGAGGAATAA

Upstream 100 bases:

>100_bases
TTAACGTTATGTGGAAATATAAAACTTATAAAACTTATAAAACTTGTCTTTTTACTTTGTTATAATCAAAAGGACATATA
AACAGAAACGAGGGGAAACA

Downstream 100 bases:

>100_bases
TGACAGTAAGATATTATTGGGGTAAGCCCAAAGACATTATAAGGTGGTATCTTAGAGGAACGTTATACCTTAGCGCTCAA
AGCAGGCAGTCTTATATTGA

Product: putative terminase small subunit

Products: NA

Alternate protein names: Phage Terminase Small Subunit; Prophage; Prophage Lp2 Protein; Phage Terminase Family Protein; Terminase Subunit; Terminase Superantigen-Encoding Pathogenicity Islands SaPI; Phage-Related Terminase Small Subunit; Terminase Small Subunit G1p

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTPKQRKFCDEYIKTGNATQSAINAGYSQKTAKSIGAENLTKPDIKKYIDSKLKDISNNAIATAEETLTILTQIVRGEHT
EQVITAEGDVIDKHPDTNQIIRASSEILKRYPLVQDININGNLSVSNPFENLTEEELRILASRDEE

Sequences:

>Translated_146_residues
MTPKQRKFCDEYIKTGNATQSAINAGYSQKTAKSIGAENLTKPDIKKYIDSKLKDISNNAIATAEETLTILTQIVRGEHT
EQVITAEGDVIDKHPDTNQIIRASSEILKRYPLVQDININGNLSVSNPFENLTEEELRILASRDEE
>Mature_145_residues
TPKQRKFCDEYIKTGNATQSAINAGYSQKTAKSIGAENLTKPDIKKYIDSKLKDISNNAIATAEETLTILTQIVRGEHTE
QVITAEGDVIDKHPDTNQIIRASSEILKRYPLVQDININGNLSVSNPFENLTEEELRILASRDEE

Specific function: Unknown

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16290; Mature: 16159

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPKQRKFCDEYIKTGNATQSAINAGYSQKTAKSIGAENLTKPDIKKYIDSKLKDISNNA
CCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
IATAEETLTILTQIVRGEHTEQVITAEGDVIDKHPDTNQIIRASSEILKRYPLVQDININ
HHHHHHHHHHHHHHHCCCCCHHEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCEECCCC
GNLSVSNPFENLTEEELRILASRDEE
CCEECCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPKQRKFCDEYIKTGNATQSAINAGYSQKTAKSIGAENLTKPDIKKYIDSKLKDISNNA
CCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
IATAEETLTILTQIVRGEHTEQVITAEGDVIDKHPDTNQIIRASSEILKRYPLVQDININ
HHHHHHHHHHHHHHHCCCCCHHEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCEECCCC
GNLSVSNPFENLTEEELRILASRDEE
CCEECCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA