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The map label for this gene is rpe [H]

Identifier: 125624957

GI number: 125624957

Start: 2156049

End: 2156711

Strand: Reverse

Name: rpe [H]

Synonym: llmg_2190

Alternate gene names: 125624957

Gene position: 2156711-2156049 (Counterclockwise)

Preceding gene: 125624958

Following gene: 125624956

Centisome position: 85.26

GC content: 37.25

Gene sequence:

>663_bases
ATGAAAAATAAAATTGCTCCATCAATTTTGTCAGCAGATTTTGGAAATTTTGCAAGAGATGTTAAACATTTAGAGACTGC
TGGCGCTGACCTTGTACATATTGATGTGATGGACGGACATTTTGTAGATAATTTAACCTTCGGAGCCGGAGTTGTTTCGG
CACTTCGCTCGCAAACAAGTTTGTTTTTTGATGTTCATATGATGGTTGAGAATCCAGAAAAATATGTGGATGACTTTGCA
AAAGCAGGTGCAGATAGCATGAGTATTCATGTTGAAGCAACCAATCATATCCATGGAGCGCTGCAAAAAATTAAGAATGC
TGGAATGAAAGCTTCGGTAGTGATTAATCCTGGAACTCCTGTAGAGGCGATTAAAACCGTCTTACCACTTGTGGATATGG
TTTTAGTGATGACAGTCAATCCTGGTTTTGGCGGTCAAAAATTTATTCCTGAAATGATGGATAAAGTACGTGAACTCACT
CAAATTCGAACTGACAAAAAGCTTAATTTTGAAATTGAAGTGGATGGTGGCATTGACGACCAAACAATTAAAGTAGCAAA
AGCTGCTGGTGCCAATGTCTTTGTTGCTGGGTCGTTTGTTTTTAATGGTGAAGTAGAAAAAAACATCGAAAAATTAAAAG
AAGAACTAATGGAAAAACTATGA

Upstream 100 bases:

>100_bases
GAATCATCAGATAATAGTGGTGAATAAGGGCTTTGTGATTTTTTTGTTGAGAGTTGTTTTTTAAATAAGAATCGTAGTAT
TCTTTAGAGAGAGGATAAAA

Downstream 100 bases:

>100_bases
TTATTTGGTTAAATGGTGCATATGGTTCGGGAAAGACAACTATTGCTGAACTATTGCATGAATGTATTTCTCCCTCGTGG
ATTTATGACCCAGAGGAAAT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKNKIAPSILSADFGNFARDVKHLETAGADLVHIDVMDGHFVDNLTFGAGVVSALRSQTSLFFDVHMMVENPEKYVDDFA
KAGADSMSIHVEATNHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELT
QIRTDKKLNFEIEVDGGIDDQTIKVAKAAGANVFVAGSFVFNGEVEKNIEKLKEELMEKL

Sequences:

>Translated_220_residues
MKNKIAPSILSADFGNFARDVKHLETAGADLVHIDVMDGHFVDNLTFGAGVVSALRSQTSLFFDVHMMVENPEKYVDDFA
KAGADSMSIHVEATNHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELT
QIRTDKKLNFEIEVDGGIDDQTIKVAKAAGANVFVAGSFVFNGEVEKNIEKLKEELMEKL
>Mature_220_residues
MKNKIAPSILSADFGNFARDVKHLETAGADLVHIDVMDGHFVDNLTFGAGVVSALRSQTSLFFDVHMMVENPEKYVDDFA
KAGADSMSIHVEATNHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELT
QIRTDKKLNFEIEVDGGIDDQTIKVAKAAGANVFVAGSFVFNGEVEKNIEKLKEELMEKL

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=44.811320754717, Blast_Score=178, Evalue=4e-45,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=43.3962264150943, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI24307923, Length=164, Percent_Identity=38.4146341463415, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI1789788, Length=214, Percent_Identity=45.3271028037383, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=42.2885572139304, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1790754, Length=172, Percent_Identity=31.3953488372093, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=199, Percent_Identity=47.2361809045226, Blast_Score=176, Evalue=8e-45,
Organism=Saccharomyces cerevisiae, GI6322341, Length=234, Percent_Identity=47.008547008547, Blast_Score=198, Evalue=6e-52,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=42.4528301886792, Blast_Score=176, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23972; Mature: 23972

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKIAPSILSADFGNFARDVKHLETAGADLVHIDVMDGHFVDNLTFGAGVVSALRSQTS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LFFDVHMMVENPEKYVDDFAKAGADSMSIHVEATNHIHGALQKIKNAGMKASVVINPGTP
HEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCC
VEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELTQIRTDKKLNFEIEVDGGIDD
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
QTIKVAKAAGANVFVAGSFVFNGEVEKNIEKLKEELMEKL
HHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKNKIAPSILSADFGNFARDVKHLETAGADLVHIDVMDGHFVDNLTFGAGVVSALRSQTS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LFFDVHMMVENPEKYVDDFAKAGADSMSIHVEATNHIHGALQKIKNAGMKASVVINPGTP
HEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCC
VEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELTQIRTDKKLNFEIEVDGGIDD
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
QTIKVAKAAGANVFVAGSFVFNGEVEKNIEKLKEELMEKL
HHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA