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The map label for this gene is cbf [H]

Identifier: 125624953

GI number: 125624953

Start: 2153217

End: 2154161

Strand: Reverse

Name: cbf [H]

Synonym: llmg_2186

Alternate gene names: 125624953

Gene position: 2154161-2153217 (Counterclockwise)

Preceding gene: 125624954

Following gene: 125624952

Centisome position: 85.16

GC content: 37.25

Gene sequence:

>945_bases
ATGGTGCTCATTAAAAACTTAGAAATTGGCGAATTTTTTGAAGGATTTTACCTGATTAAATCAGTTGAATTACGTCAAAC
GCGGGCGGGGAAAGACTTTTTAGCTTTGAGTTTTCAAGACCGAACGGGAACAATCAATGGAAATATTTGGGATGCTAATC
CAAAAGCGGTTGAACAGTTTCGAGCTGGTCGGGTCGTGCATATGAAGGCTCTCAAAGAACTCTATAATGGAATGCCTCAA
GTTAATAAAATACAATTGCGTTTAGCGACAGATAGTGAACCCAATCAACCTCACGATTATCGGGAAAGCTCACCTGTTCA
AGAAAAAGATTTACGTGAATATGTTCAATCGATTCTTTTTAAAATTGAAAATGCAACCTTAAATCGAATTGTACGCACGA
TTTTGAAAAAATTTGATAAGGAATTTTATGAATTTCCTGCAGCCAAAACTAATCACCATGCCTTTGAAGGAGGGCTTGCT
TATCATACAACAACCATGCTTCATTTAGCAGAAAAAGTCTGCGAAGTTTATCCACAACTCAACGAAAATTTGATGTTTGC
TGGTGTATTACTTCATGACATGGCAAAATGTTTGGAATTTACAGGTGCCGAAAATACTTCTTATACTTTAAGAGGAAACT
TGCTTGGACATATTGTTTTGATTGATGAAGAAGTGAGTAAAGCCGCCATTGAACTTGGATTTGATGATGATAATGAAGAT
TTATTGATGCTTCGTCATTGTTTATTGAGCCATCATGGGGAGTTGGAGTATGGTAGTCCTGTTCGTCCACAAATTATGGA
AGCAGAAATGATTCATCAAATTGATGTCATGGATGCCAACATGATGATGATGACTACGGCGACTCAAACGCTCGACCCTG
GTCAATTTAGTCAGCGGGTTTGGGCTTTATCTAATCGTAACTTTTATAAACCAAGAAAAGATTAA

Upstream 100 bases:

>100_bases
AGCAGCAAACTTTTGGATTTAGATTGACAAAGTAATAAATATTTTATATCGCTTGGCTAGGTCACCCAAAGAGTCGGGCT
TACATCTTAAAGGAGAAAAC

Downstream 100 bases:

>100_bases
ACCGTGCTTACACGGTTTTTTTGCTGACAGAAATTTTTGTCAGTAAAAATGGTAAAATAGAAAGAAGATAAAAATATTAA
GGAGTTTTTTATGAATTACA

Product: putative CMP-binding factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MVLIKNLEIGEFFEGFYLIKSVELRQTRAGKDFLALSFQDRTGTINGNIWDANPKAVEQFRAGRVVHMKALKELYNGMPQ
VNKIQLRLATDSEPNQPHDYRESSPVQEKDLREYVQSILFKIENATLNRIVRTILKKFDKEFYEFPAAKTNHHAFEGGLA
YHTTTMLHLAEKVCEVYPQLNENLMFAGVLLHDMAKCLEFTGAENTSYTLRGNLLGHIVLIDEEVSKAAIELGFDDDNED
LLMLRHCLLSHHGELEYGSPVRPQIMEAEMIHQIDVMDANMMMMTTATQTLDPGQFSQRVWALSNRNFYKPRKD

Sequences:

>Translated_314_residues
MVLIKNLEIGEFFEGFYLIKSVELRQTRAGKDFLALSFQDRTGTINGNIWDANPKAVEQFRAGRVVHMKALKELYNGMPQ
VNKIQLRLATDSEPNQPHDYRESSPVQEKDLREYVQSILFKIENATLNRIVRTILKKFDKEFYEFPAAKTNHHAFEGGLA
YHTTTMLHLAEKVCEVYPQLNENLMFAGVLLHDMAKCLEFTGAENTSYTLRGNLLGHIVLIDEEVSKAAIELGFDDDNED
LLMLRHCLLSHHGELEYGSPVRPQIMEAEMIHQIDVMDANMMMMTTATQTLDPGQFSQRVWALSNRNFYKPRKD
>Mature_314_residues
MVLIKNLEIGEFFEGFYLIKSVELRQTRAGKDFLALSFQDRTGTINGNIWDANPKAVEQFRAGRVVHMKALKELYNGMPQ
VNKIQLRLATDSEPNQPHDYRESSPVQEKDLREYVQSILFKIENATLNRIVRTILKKFDKEFYEFPAAKTNHHAFEGGLA
YHTTTMLHLAEKVCEVYPQLNENLMFAGVLLHDMAKCLEFTGAENTSYTLRGNLLGHIVLIDEEVSKAAIELGFDDDNED
LLMLRHCLLSHHGELEYGSPVRPQIMEAEMIHQIDVMDANMMMMTTATQTLDPGQFSQRVWALSNRNFYKPRKD

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36088; Mature: 36088

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIKNLEIGEFFEGFYLIKSVELRQTRAGKDFLALSFQDRTGTINGNIWDANPKAVEQF
CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCEECCCHHHHHHH
RAGRVVHMKALKELYNGMPQVNKIQLRLATDSEPNQPHDYRESSPVQEKDLREYVQSILF
HCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KIENATLNRIVRTILKKFDKEFYEFPAAKTNHHAFEGGLAYHTTTMLHLAEKVCEVYPQL
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCC
NENLMFAGVLLHDMAKCLEFTGAENTSYTLRGNLLGHIVLIDEEVSKAAIELGFDDDNED
CCCEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCHHEEEECCCCCCCH
LLMLRHCLLSHHGELEYGSPVRPQIMEAEMIHQIDVMDANMMMMTTATQTLDPGQFSQRV
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
WALSNRNFYKPRKD
HHCCCCCCCCCCCC
>Mature Secondary Structure
MVLIKNLEIGEFFEGFYLIKSVELRQTRAGKDFLALSFQDRTGTINGNIWDANPKAVEQF
CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCEECCCHHHHHHH
RAGRVVHMKALKELYNGMPQVNKIQLRLATDSEPNQPHDYRESSPVQEKDLREYVQSILF
HCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KIENATLNRIVRTILKKFDKEFYEFPAAKTNHHAFEGGLAYHTTTMLHLAEKVCEVYPQL
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCC
NENLMFAGVLLHDMAKCLEFTGAENTSYTLRGNLLGHIVLIDEEVSKAAIELGFDDDNED
CCCEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCHHEEEECCCCCCCH
LLMLRHCLLSHHGELEYGSPVRPQIMEAEMIHQIDVMDANMMMMTTATQTLDPGQFSQRV
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
WALSNRNFYKPRKD
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]