Click here to switch to the map view.

The map label for this gene is ytgF [H]

Identifier: 125624927

GI number: 125624927

Start: 2116803

End: 2118398

Strand: Reverse

Name: ytgF [H]

Synonym: llmg_2156

Alternate gene names: 125624927

Gene position: 2118398-2116803 (Counterclockwise)

Preceding gene: 125624928

Following gene: 125624926

Centisome position: 83.75

GC content: 39.97

Gene sequence:

>1596_bases
ATGGACATTATTTCTATCGTTCTCTTGGTCTTATTGGTTGTATTAGTTGTCGCATTTATTTTTTATGCCCAAAATATTAA
GAAAAATAAGCAAGATGCTGAATCTCTTTTTAACGAAGCAGAAAATAAAGCAAATGAGGTGATGGCGAGTGCTAAACGTG
AGGCGGAGTCTTTGAAAAGGGAGGCTGAAGCCTTCAAAAAAGAAGCCCGTTACACCCTTCGTGAAGAAGAACAAAAGCAA
CGTCGCGAAATCGAAGATGAATTTAAGCAGGAACGTCAGGAGTTAAAGGAGACTGAAAAGCGCCTAAAACAACGTGAAGA
AATCTTAGACCGTAAGGATGATACCTTAACGAAAAAAGAAGAAAACTTAGATTCTAAAGAGGAAAACCTCGTTAGAAAAA
CTGATACGCTCAGTAAGCGAGAAGAACAATTAGCGCATATTGAAGAAAAGAAACGACTGGAATTGGAGCGTATTTCAAAT
TTGAGCATGGATGATGCTCGTGAAATTATCTTGAGTGAAACCCGTGATGGTTTAACAAAAGAGATGGCTCAAACAATTCG
TCAAAGTGAAGAAAAAGCTCAAGCAGAAGCAGATAAAAGAGCTAAAAATATTATTTCACTTGCCATTCAACGTGTTTCAT
CTGATTCGGTAGCTGAACAAACTGTTTCAGTTGTCAATTTACCAGATGATGGCATGAAGGGTCGAATTATCGGTCGTGAA
GGTCGTAATATTCGTACTTTTGAAGCTTTGACTGGAATTGATGTCATCATTGATGATACGCCAGAAGCAGTTGTACTTTC
AGGATTTGATCCAATTCGTCGTGAAATTGCTCGAATGACACTTGAACAATTAGTTCAAGATGGTCGAATTCATCCAGCTC
GCATTGAAGAGTTGGTTGAGAAAAATCGTAAGGCCCTTGATCACAAGATGCGTGAATATGGGGAACAAGCTGCATTTGAA
GTGGGCGCGCATAATTTGCATCCTGACTTGATGAAGATTATGGGACGTTTACACTTCCGTACTTCTTATGGTCAAAATGT
GCTTGACCATTCTGTTGAAGTGGCTCATATTGCTGGTAATTTAGCTGGTGAAATGGGAGAAAATGAGGCTCTTGCCAAAC
GTTCAGGATTCTTGCATGATATTGGTAAAGCACTTGACCATGAGGTTGAGGGAAGCCACGTTGAGATTGGTACAGAACTT
GCACGTAAGTACAAGGAAAATCCAATTGTAATCAACACAATTGCTAGTCACCATGGCGATACAGAACCATTAAGTAACAT
CGCAGTACTTGTTGCAGCAGCAGATGCATTGTCAGCAGCACGTCCTGGAGCTCGTCGTGAATCAATTGAAAATTACATCA
AACGTTTGAAAGACCTCGAAGCAATTTCAACAAGCTTTGATGGTGTGGAAACAGCCTTTGCTCTGCAAGCTGGACGTGAA
ATTCGAGTGATGGTTAAACCTGATAAATTGACGGATGACCAAATCGTAATTTTGGCGCGTGATGTGAAAAATCGAATCGA
AGATGAGATGGATTATCCCGGTAATATTAAAGTTACCGTTATCCGAGAAACTCGAGCGATTGACTACGCAAAATAA

Upstream 100 bases:

>100_bases
TGATATAATTAATGAGTGTTTTGCTATGCAAAATACATTAATTTATAATCAAACTGTGAGTAGAATTTATTGGAATGATT
ACTCACTTTAGAGGAGACTA

Downstream 100 bases:

>100_bases
AAAAACTGTCTTAGGACGGTTTTTTTATTTTGGATTACTAAGTTATATATCTTTTGGGTTACAAAAGCTAGTTTCTAGAG
TGGAGTTTTGATAGAATGAA

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKREAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSMDDAREIILSETRDGLTKEMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENEALAKRSGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK

Sequences:

>Translated_531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKREAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSMDDAREIILSETRDGLTKEMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENEALAKRSGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
>Mature_531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKREAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSMDDAREIILSETRDGLTKEMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENEALAKRSGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]

EC number: =3.1.4.16 [H]

Molecular weight: Translated: 60310; Mature: 60310

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSMDDAREIILSETRDGLTK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHH
EMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCEECCC
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
CCCCCHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHH
LAGEMGENEALAKRSGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
HHHCCCCCHHHHHHCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEHHHCCCC
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
EEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSMDDAREIILSETRDGLTK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHH
EMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCEECCC
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
CCCCCHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHH
LAGEMGENEALAKRSGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
HHHCCCCCHHHHHHCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEHHHCCCC
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
EEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]