| Definition | Lactococcus lactis subsp. cremoris MG1363, complete genome. |
|---|---|
| Accession | NC_009004 |
| Length | 2,529,478 |
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The map label for this gene is uvrA [H]
Identifier: 125624783
GI number: 125624783
Start: 1993652
End: 1996483
Strand: Reverse
Name: uvrA [H]
Synonym: llmg_2008
Alternate gene names: 125624783
Gene position: 1996483-1993652 (Counterclockwise)
Preceding gene: 125624784
Following gene: 125624782
Centisome position: 78.93
GC content: 40.25
Gene sequence:
>2832_bases ATGCCACAAGATAAAATAGTAATACACGGTGCACGTGAGCACAATTTAAAAAATATAGACGTTGAGATTCCAAGAGATAA ATTAGTTGTAGTCACAGGTGTTTCAGGTTCTGGTAAATCCTCACTGGCCTTTGAAACTTTATATGCGGAAGGGCAACGCC GTTATGTTGAATCCCTGTCAGCCTATGCCAGACAGTTTTTAGGAAATATGGATAAACCAGATGTTGACTCAATAGATGGT TTGTCACCAGCGATTTCCATTGACCAAAAAACAACCTCAAAAAATCCGCGTTCAACGGTCGGAACAGTCACAGAAATTAA TGATTATTTGCGTTTGCTCTATGCGCGTGTTGGAACGCCTTACTGTGTGAATGGTCACGGAAAAATTTCGGCACAATCTG TCGAAGAGATTGTTGAACAAATTCTTGAACTCCCAGAAAAAACACGTTTGCAAATCCTTGCTCCTGTCGTGCGGACTAAA AAGGGAACGCACGTTAAGATGTTTGAACGTATCCAAAAAGATGGTTATGTGCGCGTCCGTGTTGATGGTGAAGTTTACGA TATTTCAGAAGTTCCAGAGCTTGATAAAAATAAAAAACATACCATTGAAATTGTCATTGACCGGATTGTCGTGAAAGAAG GTATTCGCTCACGTCTTTTTGACTCGGTAGAAGCCGCGCTTCATCAGGCCGAAGGTTATGTTATTGTTGATAAAATGGAT GGCTCTGAGCTGCTTTTTAGTGAATTTTACGCTTGTCCTGTTTGTGGATTTACCGTTCCAGAATTAGAACCACGCCTTTT TTCATTTAATGCACCTTTTGGTTCATGTCCAGATTGTGATGGACTAGGAGTCAAATTGGAACCAGACGTCGATTTACTAA TTCCTGACACCAGTAAAACACTGCGTGAAGGGGCGATTATCTACTGGTATGGAAAAGCCTCAACTTATTACCCAGCACTT TTAGAACAAGCTATGGAGCAATTTGGCATTGATTTAGATACGCCTTGGGAAAAATTATCAGAAAAAGAGCAGCAAATCGT CCTTTATGGAAATGGCGATAAACTTTTTCATTTTCTCCACGAAGGGGATTTTGGATTACGTGACCAAGATATGACTTTTG TTGGGGTCATTCCTAATCTTTGGCGCCGTTATCGCTCGGGAATGAGTGAATCTGCCAGAGAAATGGCACGTTCGTACATG ACGGAATTGACTTGTACGACTTGTCATGGTTATCGTTTGAATGACCAAGCTTTATCTGTAAAAGTCGGCGAAAAAAATAT TGCTGAGTTTTCAATTCTGTCAATTGGCGATACGCTTGATTATGTGAAGAGTTTGGTGCTTTCTGAAAATAATGAAATGA TTGCCAAACCTATTTTGAAAGAAATCAAAGACCGTTTGGCTTTCTTGAAAAATGTTGGCTTGGATTATTTGACTTTGTCT CGTTCGAGTGGCACTTTGTCAGGTGGCGAATCTCAACGTATTCGCTTGGCGACACAGATTGGTTCTAATTTGTCTGGTGT TTTGTATATTTTGGATGAGCCATCAATCGGTTTGCATCAAAGAGATAATGATCGTTTGATTGAATCTTTGCAAAAAATGC GTGATTTAGGGAATACTTTGATTGTTGTTGAACATGATGAAGACACGATGATGGCAGCCGATTGGCTGATTGATGTCGGT CCTGGCGCGGGTGATTTAGGTGGTGAGATTATTGCTTCTGGCACACCAAAACAAGTCATGAAAAATAAGAAATCACTGAC AGGACAATATTTGTCAGGAAAAAGAGCCATTCCAGTTCCTGAAAAACGTCGGGCCATTGATAAGAAAAAGATGGTCAAGA TTACAGGTGCAAGTGAAAATAATTTACAAAATCTTGATGCTGAATTCCCAATGGGTGTCATGACTGCTGTGACTGGTGTT TCTGGTTCGGGTAAATCAACTTTGGTCAATAGTATCTTGAAAAAATCATTGGCTCAAAAATTGAATCATAATTCAGAAAA ACCCGGTAAGCATAAAAAGATTACAGGTTATGAAGGAATTGAGCGTTTGATTGATATTGACCAAAGTCCAATTGGTCGGA CTCCGCGCTCAAATCCAGCAACTTATACCAGTGTTTTTGATGATATTCGTGATTTATTTGCCAATACCAATGAGGCAAAA ATTCGTGGATATAAAAAAGGACGTTTTTCATTCAATGTCAAAGGTGGACGTTGTGAAGCCTGTTCTGGTGATGGAATCAT CAAGATTGAAATGCACTTTTTGCCAGATGTTTATGTGCCTTGTGAAGTTTGCCATGGTAGACGTTATAATTCGGAAACTT TGGAAGTTCATTATAAAGGGAAAAATATTTCGGAAGTGCTTGATATGCGCGTGTCTGACGGACTCGAATTCTTCCGTCAT ATTCCAAAAATCGAGCGGAAATTGCAAACCATTGTCGACGTTGGTTTGGGCTATGTGACGCTTGGTCAACCGGCAACAAC CTTGTCAGGTGGAGAAGCACAACGGATGAAATTGGCTTCTGAGTTGCAAAAACGCTCTAATGGTAAAGCTTTTTATATTT TGGATGAGCCAACAACTGGTTTGCACAGCGAAGATATTGCGACATTGATTCAGGTTTTAGACCGTCTGGTTGAGCAGGGA AATACGATTGTGGTCATTGAGCACAATTTGGACGTCATTAAAACGGCAGATTATATCATTGATTTAGGACCAGAAGGTGG AGCTGGCGGCGGAACAATTCTTGCCAAGGGTACGCCTGAGGAAGTAGCCAAAGTTACTGACAGCTATACTGGTCAGTATC TTAAAGCAAAATTAGAAAAAGCAAAAGGATGA
Upstream 100 bases:
>100_bases CTAGACAGGACTAGTGAACTCTCTCTTAGTGAGAATGGACATCTGCAATAAAAGAAACGTGCTAACCTGTAGAGTAAAAA CAAAATAAAAAGGAAGTAAT
Downstream 100 bases:
>100_bases GAATACTAAGAAATTTTTGTCAGTAAATATAATCAAACAAGCGTAATCTATAAATTTAGATTACGCTTTTAAGGAAAGAA AATGGATAAATTAAAAGAAA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 943; Mature: 942
Protein sequence:
>943_residues MPQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIDG LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTK KGTHVKMFERIQKDGYVRVRVDGEVYDISEVPELDKNKKHTIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMD GSELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKTLREGAIIYWYGKASTYYPAL LEQAMEQFGIDLDTPWEKLSEKEQQIVLYGNGDKLFHFLHEGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYM TELTCTTCHGYRLNDQALSVKVGEKNIAEFSILSIGDTLDYVKSLVLSENNEMIAKPILKEIKDRLAFLKNVGLDYLTLS RSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTLIVVEHDEDTMMAADWLIDVG PGAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVPEKRRAIDKKKMVKITGASENNLQNLDAEFPMGVMTAVTGV SGSGKSTLVNSILKKSLAQKLNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAK IRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNISEVLDMRVSDGLEFFRH IPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLASELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQG NTIVVIEHNLDVIKTADYIIDLGPEGGAGGGTILAKGTPEEVAKVTDSYTGQYLKAKLEKAKG
Sequences:
>Translated_943_residues MPQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIDG LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTK KGTHVKMFERIQKDGYVRVRVDGEVYDISEVPELDKNKKHTIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMD GSELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKTLREGAIIYWYGKASTYYPAL LEQAMEQFGIDLDTPWEKLSEKEQQIVLYGNGDKLFHFLHEGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYM TELTCTTCHGYRLNDQALSVKVGEKNIAEFSILSIGDTLDYVKSLVLSENNEMIAKPILKEIKDRLAFLKNVGLDYLTLS RSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTLIVVEHDEDTMMAADWLIDVG PGAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVPEKRRAIDKKKMVKITGASENNLQNLDAEFPMGVMTAVTGV SGSGKSTLVNSILKKSLAQKLNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAK IRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNISEVLDMRVSDGLEFFRH IPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLASELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQG NTIVVIEHNLDVIKTADYIIDLGPEGGAGGGTILAKGTPEEVAKVTDSYTGQYLKAKLEKAKG >Mature_942_residues PQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIDGL SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTKK GTHVKMFERIQKDGYVRVRVDGEVYDISEVPELDKNKKHTIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMDG SELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKTLREGAIIYWYGKASTYYPALL EQAMEQFGIDLDTPWEKLSEKEQQIVLYGNGDKLFHFLHEGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYMT ELTCTTCHGYRLNDQALSVKVGEKNIAEFSILSIGDTLDYVKSLVLSENNEMIAKPILKEIKDRLAFLKNVGLDYLTLSR SSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTLIVVEHDEDTMMAADWLIDVGP GAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVPEKRRAIDKKKMVKITGASENNLQNLDAEFPMGVMTAVTGVS GSGKSTLVNSILKKSLAQKLNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAKI RGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNISEVLDMRVSDGLEFFRHI PKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLASELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQGN TIVVIEHNLDVIKTADYIIDLGPEGGAGGGTILAKGTPEEVAKVTDSYTGQYLKAKLEKAKG
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=942, Percent_Identity=56.4755838641189, Blast_Score=1055, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104494; Mature: 104362
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLS CCCCCEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH AYARQFLGNMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTP HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCC YCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTKKGTHVKMFERIQKDGYVRVR EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEE VDGEVYDISEVPELDKNKKHTIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMD ECCCEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GSELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKT CCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCEEEECCCHHH LREGAIIYWYGKASTYYPALLEQAMEQFGIDLDTPWEKLSEKEQQIVLYGNGDKLFHFLH HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCCEEEEEE EGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYMTELTCTTCHGYRLNDQALSV CCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCEEECCCEEEE KVGEKNIAEFSILSIGDTLDYVKSLVLSENNEMIAKPILKEIKDRLAFLKNVGLDYLTLS EECCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE RSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTL CCCCCCCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDEDTMMAADWLIDVGPGAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVP EEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHCCCCCCCCC EKRRAIDKKKMVKITGASENNLQNLDAEFPMGVMTAVTGVSGSGKSTLVNSILKKSLAQK HHHHHCCHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAK HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH IRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKG EEEEECCEEEEEECCCEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECC KNISEVLDMRVSDGLEFFRHIPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH ELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQGNTIVVIEHNLDVIKTADYII HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEE DLGPEGGAGGGTILAKGTPEEVAKVTDSYTGQYLKAKLEKAKG EECCCCCCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCC >Mature Secondary Structure PQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLS CCCCEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH AYARQFLGNMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTP HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCC YCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTKKGTHVKMFERIQKDGYVRVR EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEE VDGEVYDISEVPELDKNKKHTIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMD ECCCEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GSELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKT CCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCEEEECCCHHH LREGAIIYWYGKASTYYPALLEQAMEQFGIDLDTPWEKLSEKEQQIVLYGNGDKLFHFLH HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCCEEEEEE EGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYMTELTCTTCHGYRLNDQALSV CCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCEEECCCEEEE KVGEKNIAEFSILSIGDTLDYVKSLVLSENNEMIAKPILKEIKDRLAFLKNVGLDYLTLS EECCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE RSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTL CCCCCCCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDEDTMMAADWLIDVGPGAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVP EEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHCCCCCCCCC EKRRAIDKKKMVKITGASENNLQNLDAEFPMGVMTAVTGVSGSGKSTLVNSILKKSLAQK HHHHHCCHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAK HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH IRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKG EEEEECCEEEEEECCCEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECC KNISEVLDMRVSDGLEFFRHIPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH ELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQGNTIVVIEHNLDVIKTADYII HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEE DLGPEGGAGGGTILAKGTPEEVAKVTDSYTGQYLKAKLEKAKG EECCCCCCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11337471 [H]