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The map label for this gene is yfjD [C]

Identifier: 125624775

GI number: 125624775

Start: 1987127

End: 1988464

Strand: Reverse

Name: yfjD [C]

Synonym: llmg_1999

Alternate gene names: 125624775

Gene position: 1988464-1987127 (Counterclockwise)

Preceding gene: 125624776

Following gene: 125624774

Centisome position: 78.61

GC content: 37.44

Gene sequence:

>1338_bases
ATGTCAAACCCTGATCCCGAGAGTGTATCGATACTCTTGCAGATTCTTTTACTAATTTTTTTAACAGCTTTAAATGCCTT
CTTCTCAGCCAGTGAGATGGCCATGGTCAGTCTCAGCCGGACAAAAGTAGAGCAAAAGGCCAGCGAAGGTGATAAGAAAT
ATATCAACCTTGTTAATATTCTTAATCAACCAAGTAATTTCCTCTCGACAATTCAGATTGGGATTACTCTGATTAACATT
TTAGCGGGGGCTAGTTTGGCCGAAGCTTTGTCATCTCGCCTAGCACCATTATTAGGTGGAACGGCACTGGCTAAAACTTT
ATCTCAAATTATTGTTTTAGCTATTTTGACTTATGTTTCACTCGTATTTGGTGAACTTTATCCTAAACGAATTGCCCAAA
ACCTCAAAGAAAAAATGGCCCTACGGGTCGCACCACCAATCCAATTTTTAGGAAAAGTGATGAAACCTTTTGTTTGGTTT
TTAGCAAGTTCAACCAACGTCTTGAGTCGTTTGACACCAATGAAATTTGATGATTTGGATGAAAGTATGACTCGTGATGA
AATTGAGTATTTACTTAATACCAACGATGAAGCACTTGATGATAATGAACGTGAGATGATTACTGGTGTATTCAGTTTGG
ATGAATTGGTGGCGCGTGAAATTATGGTTCCAAGAACTGACGCCTTCATGATTGATATTAATGATGACTCACGTGAAAAT
ATTACAGCTATTCTGAACGAAACTTATTCACGAGTTCCAGTTTATGATGATGACAAAGATAATATTCTAGGGATTCTACA
TGTCAAAAAACTTTTGAGATATAGTTTTGAGCATGGTTTTGATGATATTGACCTACGGGAAATTCTTCAAGAACCATTGT
TTGTCCCTGAAACAATCTTCGTTGACGATTTGATGCGCCAAATGCGCAAAACCCAAAATCAAATGGCAGTATTGCTAAAT
GAATATGGTGGCGTTGAAGGTGTAGTAACATTGGAAGATTTACTAGAAGAAATCGTCGGTGAAATTGATGACGAAACAGA
TATTGCCGAAGAAGAAGTTTTCAAAATTGGCGAAAACCTCTATGTCGTGCAAGGGAAAATGACTCTAAACGACTTCAATG
AAGAATTTGATACTCATCTTGAAAGTAATGACGTAGATACCATTGCGGGTTACTTCTTGGCAACGACTGGGAAAATTCCG
GCCAAAGGACAACAAATTGTTTGCAAAGTTGATAATGAGGAAGATCATTTTTCACTGACAAGTTTAGAAGTTTCTGGAAA
ACGTGTGGTTAAACTTCGTGTTGAATTTGACGTTGAACCAGAAGAAACAGAAATTTAA

Upstream 100 bases:

>100_bases
TAATTCTATCTAAAATGTTAACTCTTATTTTCTTAAATTCGAGCTAACTAAGTTTTAAGTGTTAAAATAAACACTATAAT
ATCTTTTTCAAGGAGCACTA

Downstream 100 bases:

>100_bases
AAAAATACTGACAGAAATTCTGTCAGTATTTTTATTTAATCAAAAAGCTTTAATTAGTTAAACCCTTACATTTATTGACT
GACCGAGCTTGATTTACTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSNPDPESVSILLQILLLIFLTALNAFFSASEMAMVSLSRTKVEQKASEGDKKYINLVNILNQPSNFLSTIQIGITLINI
LAGASLAEALSSRLAPLLGGTALAKTLSQIIVLAILTYVSLVFGELYPKRIAQNLKEKMALRVAPPIQFLGKVMKPFVWF
LASSTNVLSRLTPMKFDDLDESMTRDEIEYLLNTNDEALDDNEREMITGVFSLDELVAREIMVPRTDAFMIDINDDSREN
ITAILNETYSRVPVYDDDKDNILGILHVKKLLRYSFEHGFDDIDLREILQEPLFVPETIFVDDLMRQMRKTQNQMAVLLN
EYGGVEGVVTLEDLLEEIVGEIDDETDIAEEEVFKIGENLYVVQGKMTLNDFNEEFDTHLESNDVDTIAGYFLATTGKIP
AKGQQIVCKVDNEEDHFSLTSLEVSGKRVVKLRVEFDVEPEETEI

Sequences:

>Translated_445_residues
MSNPDPESVSILLQILLLIFLTALNAFFSASEMAMVSLSRTKVEQKASEGDKKYINLVNILNQPSNFLSTIQIGITLINI
LAGASLAEALSSRLAPLLGGTALAKTLSQIIVLAILTYVSLVFGELYPKRIAQNLKEKMALRVAPPIQFLGKVMKPFVWF
LASSTNVLSRLTPMKFDDLDESMTRDEIEYLLNTNDEALDDNEREMITGVFSLDELVAREIMVPRTDAFMIDINDDSREN
ITAILNETYSRVPVYDDDKDNILGILHVKKLLRYSFEHGFDDIDLREILQEPLFVPETIFVDDLMRQMRKTQNQMAVLLN
EYGGVEGVVTLEDLLEEIVGEIDDETDIAEEEVFKIGENLYVVQGKMTLNDFNEEFDTHLESNDVDTIAGYFLATTGKIP
AKGQQIVCKVDNEEDHFSLTSLEVSGKRVVKLRVEFDVEPEETEI
>Mature_444_residues
SNPDPESVSILLQILLLIFLTALNAFFSASEMAMVSLSRTKVEQKASEGDKKYINLVNILNQPSNFLSTIQIGITLINIL
AGASLAEALSSRLAPLLGGTALAKTLSQIIVLAILTYVSLVFGELYPKRIAQNLKEKMALRVAPPIQFLGKVMKPFVWFL
ASSTNVLSRLTPMKFDDLDESMTRDEIEYLLNTNDEALDDNEREMITGVFSLDELVAREIMVPRTDAFMIDINDDSRENI
TAILNETYSRVPVYDDDKDNILGILHVKKLLRYSFEHGFDDIDLREILQEPLFVPETIFVDDLMRQMRKTQNQMAVLLNE
YGGVEGVVTLEDLLEEIVGEIDDETDIAEEEVFKIGENLYVVQGKMTLNDFNEEFDTHLESNDVDTIAGYFLATTGKIPA
KGQQIVCKVDNEEDHFSLTSLEVSGKRVVKLRVEFDVEPEETEI

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=403, Percent_Identity=32.5062034739454, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI40068055, Length=360, Percent_Identity=25.2777777777778, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40068053, Length=360, Percent_Identity=25.2777777777778, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI94681046, Length=348, Percent_Identity=25.5747126436782, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI145693175, Length=387, Percent_Identity=29.4573643410853, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1790664, Length=404, Percent_Identity=26.2376237623762, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786879, Length=258, Percent_Identity=31.7829457364341, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87082033, Length=246, Percent_Identity=28.8617886178862, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788119, Length=214, Percent_Identity=32.2429906542056, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17539402, Length=364, Percent_Identity=24.1758241758242, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=268, Percent_Identity=26.4925373134328, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 50080; Mature: 49949

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPDPESVSILLQILLLIFLTALNAFFSASEMAMVSLSRTKVEQKASEGDKKYINLVNI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LNQPSNFLSTIQIGITLINILAGASLAEALSSRLAPLLGGTALAKTLSQIIVLAILTYVS
HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LVFGELYPKRIAQNLKEKMALRVAPPIQFLGKVMKPFVWFLASSTNVLSRLTPMKFDDLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCH
ESMTRDEIEYLLNTNDEALDDNEREMITGVFSLDELVAREIMVPRTDAFMIDINDDSREN
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
ITAILNETYSRVPVYDDDKDNILGILHVKKLLRYSFEHGFDDIDLREILQEPLFVPETIF
HHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHH
VDDLMRQMRKTQNQMAVLLNEYGGVEGVVTLEDLLEEIVGEIDDETDIAEEEVFKIGENL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHCCCE
YVVQGKMTLNDFNEEFDTHLESNDVDTIAGYFLATTGKIPAKGQQIVCKVDNEEDHFSLT
EEEEECEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEE
SLEVSGKRVVKLRVEFDVEPEETEI
EEEECCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
SNPDPESVSILLQILLLIFLTALNAFFSASEMAMVSLSRTKVEQKASEGDKKYINLVNI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LNQPSNFLSTIQIGITLINILAGASLAEALSSRLAPLLGGTALAKTLSQIIVLAILTYVS
HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LVFGELYPKRIAQNLKEKMALRVAPPIQFLGKVMKPFVWFLASSTNVLSRLTPMKFDDLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCH
ESMTRDEIEYLLNTNDEALDDNEREMITGVFSLDELVAREIMVPRTDAFMIDINDDSREN
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
ITAILNETYSRVPVYDDDKDNILGILHVKKLLRYSFEHGFDDIDLREILQEPLFVPETIF
HHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHH
VDDLMRQMRKTQNQMAVLLNEYGGVEGVVTLEDLLEEIVGEIDDETDIAEEEVFKIGENL
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHCCCE
YVVQGKMTLNDFNEEFDTHLESNDVDTIAGYFLATTGKIPAKGQQIVCKVDNEEDHFSLT
EEEEECEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEE
SLEVSGKRVVKLRVEFDVEPEETEI
EEEECCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]