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The map label for this gene is recD [H]

Identifier: 125624704

GI number: 125624704

Start: 1901770

End: 1904271

Strand: Reverse

Name: recD [H]

Synonym: llmg_1922

Alternate gene names: 125624704

Gene position: 1904271-1901770 (Counterclockwise)

Preceding gene: 125624705

Following gene: 125624702

Centisome position: 75.28

GC content: 37.77

Gene sequence:

>2502_bases
ATGACGGATAAAACTTATGTTACAGGCTCAATTGAAGCTATTTTTTTCTCTAATCCAAGCAATTTTTATAAAGTTTTATT
AATTGAGATTGATGAAACAAATGCTGAATATGATGATTTTGAAATTGTGGTCAATGGGACAATTGGCGATGTAGTCGAAG
GGGATTCTTATACTTTTTATGGGCAATTAACCCAGCATCCAAAGTATGGGGAACAATTGCAAGTCAGTCAATATGAGAAG
GCTGTACCAACGTCTGGTGCTGGTTTGGTCAAGTATTTTTCATCAGATAAATTTCCAGGGATTGGTAAAAAAACGGCAGA
GAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCTATTTTAGAAGCGCCTGAGAAATTGGATGGTTTATTAACTC
TAGCCAGAAAAAATTCATTTATCAAACGTTTGCGTGAAAATCATGGTATGGAAAAAGTGCTGACCAAGCTTGCAGAGTAT
GGCTTGCCAAGTAAACTCACTTTTCAAATCTATGAGTTGTACAAAGAGGAAACGATTGAAAAAATTGAGGGAAATCCTTA
TCAACTTGTGGAAGAAGTTAAAGGGGTTGGCTTTAAAACTGCCGATAAGATTGCGAGTGAACTAGGGATTGAAGCGGATA
GTCCAAATCGTTTTCGAGCGGCTTTGATGCACGAAGTCAATACGCATTCGCAAGCAACAGGTGATACCTACATTGAAGCC
AAGAATTTACTTGAGTTGACGATAGACTTACTTGAAGAAGCCAGAAATATTGAGGTCAATCCAGCTGAAGTTGCTGCGGA
AATAAATGGTTTAATTGTTGATGGAAAAGTACAGCAAGAAGGAACGAAAATATTTGAAAATTCCTTGTTTTTTGCTGAAG
ACGGTATCCGAAAATCACTGACAGCCTTAACTAATCGTTCGGGAAAAGATTTTGCTGACGAAAAGTTACTGACAGTTTTG
GAAGAGGTAGAAAAAGATTTAGAGATTACTTATGATGAACTTCAGAAACAGGCCATCATTGGAGCGATGAATCAGCAATT
TTTCATTTTGACTGGGGGACCAGGAACGGGGAAAACAACGATTATTAATGGTTTCATTGAAACTTATGCCCGTCTTTATC
AGTTAGATTTAGAACCTGACCATTATAATGATGACGTTTTTCCTATTTTACTGGCGGCACCGACTGGTCGCGCTTCAAGA
CGGATGAATGAGTTGACTGGACTTCCAGCAGCAACAATTCATCGGCACTTAGGCTTAGGGCAAGATGAGGCAGAAGATGC
GATTGGTAATGAGTTGTCAGGTTCACTTTTGATTGTCGATGAATTTTCAATGGTTGATACTTGGCTAGCCAACAAACTTT
TTCAAGCCATTCCTGGTTCAATGAAAGTCCTTCTCGTTGGCGATGCTGACCAACTTCCTTCTGTGGGCCCTGGACAAATT
TTTGCAGATTTATTAAAAATTCCAGAAATTCCATCAGTAAAATTGGATAAGATTTTTCGTCAGGGAGATGATTCAACGAT
TACCGATTTGGCTCATCATATCAAAGATGGACAATTACCTGCAGATTTTACGGTGAAAAAACCTGACCGTTCTTATTTTG
AAGTGAGTGCTAATTTTGTACCACAAATGGTGGAGCAAATTGCTAGTGCTTGGCAAAAAAGAGGAAATAATCCTTTTGAA
TTACAAATTTTAGCGCCCATGTATAAAGGGACCGCTGGGATTAATGCAATGAATATTCTCTTGCAAAATCTCTTTAATCC
GCTTAATGACCGACTTGAATTTGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTATTACATTTAGTCAATGACG
CTGAGGCCAATGTATTCAATGGAGATTTAGGACAAATTGTTGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGATTGTGATGGATTTTGATGGTCAAGAATTGACCTATCCCAGAGCTGAATGGTATAAAATTACGCTTGCTTATGCTAT
GTCTATCCATAAATCCCAAGGTTCGGAATTTTCAACGGTCATCGTCCCGATGGTCTCTTCTTATTCACGGATGTTAGAGC
GAAATTTACTATATACAGCAATCACGCGGGCAAAGCAAAGCTTAATTTTATTGGGTGAAGAGCGTGCCTTTGCTCAGGCT
GTGGCGCGTGAAGGAGCCAATCGAAAAACTTTTCTCGTTGAGCGTTTTAAGGATGATAAGCCTGCCGCAGAAAATCTGTC
AGTAGATTCCTTAACTAAAAAAGTTACTGACAAGAAGGAAATATCTAACAAAGAGAAAAATTCTGGATCAGCAGCAGACT
TAGACTTAGAAAATTTTTCTGGCAGAAAAAAAACAGCACCAAAAGTTGAGGAAATTTCATTATTTGATGAAGAAACTGAA
AGTTTGGGGAATGGAATTCTAACAGAAGCGCTAATTTTATCTGGCAATTTTGATCCCTTAATTGGATTGACTGAGCAAGA
TTTTGCGATTTTTAATAAATAA

Upstream 100 bases:

>100_bases
TCGCTGAATTACGTTCTGTTGGCGGTCTAGCGAATAATACAGTTACAGTTTTGGAATCAAATGGTAGTCATTTTGATTTG
AAAATTTGGGATAAACAGCT

Downstream 100 bases:

>100_bases
ATAAAAAGACTGACAGAAATTTCTGTCAGTCTTTTTATCTTCGTCAGTAATTTTGGATATAAAAAAATCTGTCAAAGAGA
CAGAAATTTTTTCTTAGCCA

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 832

Protein sequence:

>833_residues
MTDKTYVTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKLTFQIYELYKEETIEKIEGNPYQLVEEVKGVGFKTADKIASELGIEADSPNRFRAALMHEVNTHSQATGDTYIEA
KNLLELTIDLLEEARNIEVNPAEVAAEINGLIVDGKVQQEGTKIFENSLFFAEDGIRKSLTALTNRSGKDFADEKLLTVL
EEVEKDLEITYDELQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLYQLDLEPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDAIGNELSGSLLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPADFTVKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGTAGINAMNILLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
EIVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTFLVERFKDDKPAAENLSVDSLTKKVTDKKEISNKEKNSGSAADLDLENFSGRKKTAPKVEEISLFDEETE
SLGNGILTEALILSGNFDPLIGLTEQDFAIFNK

Sequences:

>Translated_833_residues
MTDKTYVTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKLTFQIYELYKEETIEKIEGNPYQLVEEVKGVGFKTADKIASELGIEADSPNRFRAALMHEVNTHSQATGDTYIEA
KNLLELTIDLLEEARNIEVNPAEVAAEINGLIVDGKVQQEGTKIFENSLFFAEDGIRKSLTALTNRSGKDFADEKLLTVL
EEVEKDLEITYDELQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLYQLDLEPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDAIGNELSGSLLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPADFTVKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGTAGINAMNILLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
EIVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTFLVERFKDDKPAAENLSVDSLTKKVTDKKEISNKEKNSGSAADLDLENFSGRKKTAPKVEEISLFDEETE
SLGNGILTEALILSGNFDPLIGLTEQDFAIFNK
>Mature_832_residues
TDKTYVTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEKA
VPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEYG
LPSKLTFQIYELYKEETIEKIEGNPYQLVEEVKGVGFKTADKIASELGIEADSPNRFRAALMHEVNTHSQATGDTYIEAK
NLLELTIDLLEEARNIEVNPAEVAAEINGLIVDGKVQQEGTKIFENSLFFAEDGIRKSLTALTNRSGKDFADEKLLTVLE
EVEKDLEITYDELQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLYQLDLEPDHYNDDVFPILLAAPTGRASRR
MNELTGLPAATIHRHLGLGQDEAEDAIGNELSGSLLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQIF
ADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPADFTVKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFEL
QILAPMYKGTAGINAMNILLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQDE
IVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQAV
AREGANRKTFLVERFKDDKPAAENLSVDSLTKKVTDKKEISNKEKNSGSAADLDLENFSGRKKTAPKVEEISLFDEETES
LGNGILTEALILSGNFDPLIGLTEQDFAIFNK

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=408, Percent_Identity=27.9411764705882, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 92641; Mature: 92510

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKTYVTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFY
CCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEE
GQLTQHPKYGEQLQVSQYEKAVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDS
EEECCCCCCCCCEEHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHH
ILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEYGLPSKLTFQIYELYKEETIE
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KIEGNPYQLVEEVKGVGFKTADKIASELGIEADSPNRFRAALMHEVNTHSQATGDTYIEA
HHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
KNLLELTIDLLEEARNIEVNPAEVAAEINGLIVDGKVQQEGTKIFENSLFFAEDGIRKSL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECEEHHHHHHHHHCCEEEECCCHHHHH
TALTNRSGKDFADEKLLTVLEEVEKDLEITYDELQKQAIIGAMNQQFFILTGGPGTGKTT
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
IINGFIETYARLYQLDLEPDHYNDDVFPILLAAPTGRASRRMNELTGLPAATIHRHLGLG
HHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCCC
QDEAEDAIGNELSGSLLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
CCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCCCHHH
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPADFTVKKPDRSYFEVSANFV
HHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEEHHHHH
PQMVEQIASAWQKRGNNPFELQILAPMYKGTAGINAMNILLQNLFNPLNDRLEFALGDMK
HHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
FREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQDEIVMDFDGQELTYPRAEWYK
ECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHEE
ITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
EEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHHHH
VAREGANRKTFLVERFKDDKPAAENLSVDSLTKKVTDKKEISNKEKNSGSAADLDLENFS
HHHCCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
GRKKTAPKVEEISLFDEETESLGNGILTEALILSGNFDPLIGLTEQDFAIFNK
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
TDKTYVTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFY
CCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEE
GQLTQHPKYGEQLQVSQYEKAVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDS
EEECCCCCCCCCEEHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHH
ILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEYGLPSKLTFQIYELYKEETIE
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KIEGNPYQLVEEVKGVGFKTADKIASELGIEADSPNRFRAALMHEVNTHSQATGDTYIEA
HHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
KNLLELTIDLLEEARNIEVNPAEVAAEINGLIVDGKVQQEGTKIFENSLFFAEDGIRKSL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECEEHHHHHHHHHCCEEEECCCHHHHH
TALTNRSGKDFADEKLLTVLEEVEKDLEITYDELQKQAIIGAMNQQFFILTGGPGTGKTT
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
IINGFIETYARLYQLDLEPDHYNDDVFPILLAAPTGRASRRMNELTGLPAATIHRHLGLG
HHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCCC
QDEAEDAIGNELSGSLLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
CCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCCCHHH
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPADFTVKKPDRSYFEVSANFV
HHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEEHHHHH
PQMVEQIASAWQKRGNNPFELQILAPMYKGTAGINAMNILLQNLFNPLNDRLEFALGDMK
HHHHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
FREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQDEIVMDFDGQELTYPRAEWYK
ECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHEE
ITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
EEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHHHH
VAREGANRKTFLVERFKDDKPAAENLSVDSLTKKVTDKKEISNKEKNSGSAADLDLENFS
HHHCCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
GRKKTAPKVEEISLFDEETESLGNGILTEALILSGNFDPLIGLTEQDFAIFNK
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]