| Definition | Lactococcus lactis subsp. cremoris MG1363, complete genome. |
|---|---|
| Accession | NC_009004 |
| Length | 2,529,478 |
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The map label for this gene is alaS [H]
Identifier: 125624689
GI number: 125624689
Start: 1883038
End: 1885656
Strand: Reverse
Name: alaS [H]
Synonym: llmg_1906
Alternate gene names: 125624689
Gene position: 1885656-1883038 (Counterclockwise)
Preceding gene: 125624690
Following gene: 125624688
Centisome position: 74.55
GC content: 38.37
Gene sequence:
>2619_bases ATGAAAACCATGACTTCCGCAGAAGTTCGCCAAATGTTCCTCGACTTTTTCAAATCAAAAGGTCATACTGTTGAACCTTC GCAAAGTCTTGTTCCTGTGAATGACCCAACTTTGCTTTGGATTAATTCAGGAGTAGCAACACTAAAAAAATATTTTGATG GTTCAGTCGTTCCTGAAAATCCAAGATTGACTAATGCTCAAAAAGCGATTCGGACAAATGATATTGAAAATGTCGGAAAA ACAGCCCGTCACCACACCATGTTTGAAATGCTTGGAAATTTTTCAATTGGTGATTATTTCCGTAATGAAGCGATTGCTTT TGCTTGGGAATTATTGACAAGTTCTGAATGGTTTGAGTTTCCAGCAGAAAAACTTTATATCACTTATTATCCAGCTGATA AAGATACCTATAATCGCTGGGTTGAAGTTGGAGTTGATCCAACACATCTTGTCCCAATTGAAGATAATTTCTGGGAAATT GGTGCTGGTCCTTCAGGTCCAGATACAGAAATATTCTTTGACCGTGGGGAGATTTACGACCCAGAGCATGTTGGTTTGAA ATTATTGGCTGAAGATATTGAAAATGACCGTTATATCGAGATTTGGAATATTGTTTTGTCACAATTTAATGCGAATCCAG CGATTCCACGTTCGGAATATCCTGAATTACCACAGAAAAATATTGATACGGGAATGGGGCTTGAACGGATGGTCTGCATT ATTCAAGGTGGTAAAACAAACTTTGATACAGACCTATTCTTGCCAATTATTCGCGAAATTGAGAAACTCTCTGGAAAAAC TTACAGTCCAGACAGTGAAAATATGAGTTTCAAAGTGATTGCTGACCATATTCGCTCACTTTCATTTGCTATTGGTGATG GTGCTTTGCCAGGAAATGAAGGGCGTGGTTATGTTCTGCGTCGTTTACTTCGTCGCGCGGTTATGCACGGTAAAAAATTG GGAATTCAAGGTAAATTTTTAGCTTCACTCGTGCCAACTGTTGGTAAAATCATGCAATCTTATTATCCAGAAGTTCTCGA AAAAGAAGATTTCATTATGCAAATTATTGACCGTGAAGAAGAAACTTTCAATCGGACGATTGATGCAGGTCAAAAATTGA TTGATGAGCTTTTGGTAAATCTTAAGGCTGAAGGTAAAGATAGAATTGAAGGGGCTGATATTTTCCGCCTCTACGATACA TATGGATTCCCTGTCGAATTAACCGAAGAATTGGCAGAAGATGAAGGATTCAAAATTGAGCATGAAGGATTCAAAGTAGC TATGAAAGCTCAACAAGACCGTGCGCGTGCGGCTGTGGTTAAGGGTGGCTCAATGGGTGCTCAAAATGAAACTTTGTCTT CTATCGAAGTGGACTCAAAATTCCTTTATGAAGATAAAAAAGCACAAGCAAAATTACTCGTGGCTATAAAAGATGATGAG CTTGTTGATGAAGTTACTGGCAAAGCTCAATTAGTATTTGATGTGACGCCTTTCTATGCTGAAATGGGTGGTCAAGTGGC TGACCATGGAGTCATTAAAAATGCTGATGGTCAAGTGGTGGCAACTGTATTAGATGTTCAACATGCACCGCATGGACAAA ATCTTCATTCTGTGGAAACTATCTCACCACTTAAAGTTGGGGAAACTTATACTTTAGAAATTGATGAAGAACGTCGTTCT GCTGTTGTAAAAAACCATACAGCGACTCACTTACTTCATGCTGCTTTGCATAATATTGTTGGGAATCACGCACTACAAGC TGGTTCACTTAATGAGGTAGAATTCTTACGTTTTGACTTCACTCACTTTGCTCAAGTAAGCAAAGAAGAGTTGGCTGAAA TTGAGCGTCAAGTTAATGAAGTGATTTGGCAATCATTGAAAGTTGAAACGATTGAAACCTATATTGCTACAGCAAAAGAA ATGGGTGCAATGGCTCTTTTCGGTGAAAAATATGGTAAAAATGTTCGTGTTGTAAAAATTGGAGATTATTCAATCGAACT TTGTGGAGGAACACATACGCAAACAACTTCTGAAATTGGTCTTTTCAAGATTATTAAAGAAGAAGGAATTGGTTCTGGTG TGCGCCGGATTATTGCTGTGACAGGTCAAAAAGCTTATGAAGCTTTCAAAGATGCTGAAAATACTTTGAGCGAAGTGGCT GGATTGGTTAAAGCACCACAAGCTTCACAAATCGTTGCAAAAGTTTCTAACTTACAAGATGAACTTAAAGCAGCTCAAAA AGAAAATGATGCTTTAGCTGGCAAACTTGCAGCGAGCCAATCAGATGAAATCTTCAAAAATGTACAAAGAGCTGGTTCTG TAAGCTTTATTGCGAGTCAAGTAACTGTTCCTGATGCCAAAGGCTTACGTAATTTGGCAGATATTTGGAAACAAAAAGAA TTGTCAGATATCCTCGTTTTAGTCGCTACAATTGGTGAAAAAGTAAGTCTTTTAGTGGCTTCTAAATCATTAGATGTAAA AGCGGGTAATTTAGTTAAAGAATTAGCACCATTTGTTGATGGTCGTGGTGGTGGAAAACCAGATATGGCTATGGCTGGTG GTTCAAATGCAGCAGGAATTCCTGAACTTTTGACAGCTGTTGCTGAAAAATTAGGATAG
Upstream 100 bases:
>100_bases TTTACGGTAGAATTTTATTGTTTTATTGTGAAAACATTAACAAAGTATACAAGAATAAGTTTATTGCTAAGCTATAAACT TTTTATAAAAGGAGAAAATA
Downstream 100 bases:
>100_bases GACAAGAATATCGTAGATCATCTACGATATTTTTTCTTTTTTGGTCAGCAAGTATTTGTGGTAAAATGAGAAAAATACTT GAAAGAGAAGTCTAAAATGA
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPAEKLYITYYPADKDTYNRWVEVGVDPTHLVPIEDNFWEI GAGPSGPDTEIFFDRGEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMVCI IQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRAVMHGKKL GIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDT YGFPVELTEELAEDEGFKIEHEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIEVDSKFLYEDKKAQAKLLVAIKDDE LVDEVTGKAQLVFDVTPFYAEMGGQVADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETISPLKVGETYTLEIDEERRS AVVKNHTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSLKVETIETYIATAKE MGAMALFGEKYGKNVRVVKIGDYSIELCGGTHTQTTSEIGLFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVA GLVKAPQASQIVAKVSNLQDELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKE LSDILVLVATIGEKVSLLVASKSLDVKAGNLVKELAPFVDGRGGGKPDMAMAGGSNAAGIPELLTAVAEKLG
Sequences:
>Translated_872_residues MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPAEKLYITYYPADKDTYNRWVEVGVDPTHLVPIEDNFWEI GAGPSGPDTEIFFDRGEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMVCI IQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRAVMHGKKL GIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDT YGFPVELTEELAEDEGFKIEHEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIEVDSKFLYEDKKAQAKLLVAIKDDE LVDEVTGKAQLVFDVTPFYAEMGGQVADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETISPLKVGETYTLEIDEERRS AVVKNHTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSLKVETIETYIATAKE MGAMALFGEKYGKNVRVVKIGDYSIELCGGTHTQTTSEIGLFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVA GLVKAPQASQIVAKVSNLQDELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKE LSDILVLVATIGEKVSLLVASKSLDVKAGNLVKELAPFVDGRGGGKPDMAMAGGSNAAGIPELLTAVAEKLG >Mature_872_residues MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPAEKLYITYYPADKDTYNRWVEVGVDPTHLVPIEDNFWEI GAGPSGPDTEIFFDRGEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMVCI IQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRAVMHGKKL GIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDT YGFPVELTEELAEDEGFKIEHEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIEVDSKFLYEDKKAQAKLLVAIKDDE LVDEVTGKAQLVFDVTPFYAEMGGQVADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETISPLKVGETYTLEIDEERRS AVVKNHTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSLKVETIETYIATAKE MGAMALFGEKYGKNVRVVKIGDYSIELCGGTHTQTTSEIGLFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVA GLVKAPQASQIVAKVSNLQDELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKE LSDILVLVATIGEKVSLLVASKSLDVKAGNLVKELAPFVDGRGGGKPDMAMAGGSNAAGIPELLTAVAEKLG
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=972, Percent_Identity=34.7736625514403, Blast_Score=475, Evalue=1e-134, Organism=Homo sapiens, GI38569417, Length=774, Percent_Identity=32.8165374677003, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI217416402, Length=279, Percent_Identity=26.8817204301075, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI13376886, Length=279, Percent_Identity=26.5232974910394, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1789048, Length=878, Percent_Identity=42.369020501139, Blast_Score=644, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=964, Percent_Identity=32.3651452282158, Blast_Score=439, Evalue=1e-123, Organism=Caenorhabditis elegans, GI17536681, Length=743, Percent_Identity=33.7819650067295, Blast_Score=359, Evalue=4e-99, Organism=Saccharomyces cerevisiae, GI6324911, Length=788, Percent_Identity=38.7055837563452, Blast_Score=487, Evalue=1e-138, Organism=Drosophila melanogaster, GI24582809, Length=973, Percent_Identity=32.4768756423433, Blast_Score=466, Evalue=1e-131, Organism=Drosophila melanogaster, GI45552267, Length=973, Percent_Identity=32.4768756423433, Blast_Score=466, Evalue=1e-131, Organism=Drosophila melanogaster, GI24658214, Length=814, Percent_Identity=29.3611793611794, Blast_Score=298, Evalue=2e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 96309; Mature: 96309
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS50862 AA_TRNA_LIGASE_II ; PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPEN CCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEECCCHHHHHHHHCCCCCCCC PRLTNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEF CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHCC PAEKLYITYYPADKDTYNRWVEVGVDPTHLVPIEDNFWEIGAGPSGPDTEIFFDRGEIYD CCCEEEEEEECCCCCHHHHHEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEECCCCCC PEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMVCI CHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEE IQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNE EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCC GRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREE CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH ETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDEGFKIE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEE HEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIEVDSKFLYEDKKAQAKLLVAIKDDE CCCEEEEEHHHHHHHHEEEEECCCCCCCCCCHHHHCCCHHHHHCCCCCCEEEEEEECCCH LVDEVTGKAQLVFDVTPFYAEMGGQVADHGVIKNADGQVVATVLDVQHAPHGQNLHSVET HHHHHCCCEEEEEECCHHHHHHCCCCCCCCCEECCCCCEEEEEEHHHCCCCCCCCCCCCC ISPLKVGETYTLEIDEERRSAVVKNHTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDF CCCEECCCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECH THFAQVSKEELAEIERQVNEVIWQSLKVETIETYIATAKEMGAMALFGEKYGKNVRVVKI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEE GDYSIELCGGTHTQTTSEIGLFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVA CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GLVKAPQASQIVAKVSNLQDELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQ HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE VTVPDAKGLRNLADIWKQKELSDILVLVATIGEKVSLLVASKSLDVKAGNLVKELAPFVD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHC GRGGGKPDMAMAGGSNAAGIPELLTAVAEKLG CCCCCCCCCEECCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPEN CCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEECCCHHHHHHHHCCCCCCCC PRLTNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEF CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHCC PAEKLYITYYPADKDTYNRWVEVGVDPTHLVPIEDNFWEIGAGPSGPDTEIFFDRGEIYD CCCEEEEEEECCCCCHHHHHEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEECCCCCC PEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMVCI CHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEE IQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNE EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCC GRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREE CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH ETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDEGFKIE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEE HEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIEVDSKFLYEDKKAQAKLLVAIKDDE CCCEEEEEHHHHHHHHEEEEECCCCCCCCCCHHHHCCCHHHHHCCCCCCEEEEEEECCCH LVDEVTGKAQLVFDVTPFYAEMGGQVADHGVIKNADGQVVATVLDVQHAPHGQNLHSVET HHHHHCCCEEEEEECCHHHHHHCCCCCCCCCEECCCCCEEEEEEHHHCCCCCCCCCCCCC ISPLKVGETYTLEIDEERRSAVVKNHTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDF CCCEECCCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECH THFAQVSKEELAEIERQVNEVIWQSLKVETIETYIATAKEMGAMALFGEKYGKNVRVVKI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEE GDYSIELCGGTHTQTTSEIGLFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVA CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GLVKAPQASQIVAKVSNLQDELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQ HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE VTVPDAKGLRNLADIWKQKELSDILVLVATIGEKVSLLVASKSLDVKAGNLVKELAPFVD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHC GRGGGKPDMAMAGGSNAAGIPELLTAVAEKLG CCCCCCCCCEECCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11337471 [H]