Click here to switch to the map view.

The map label for this gene is smpB [H]

Identifier: 125624685

GI number: 125624685

Start: 1880841

End: 1881308

Strand: Reverse

Name: smpB [H]

Synonym: llmg_1902

Alternate gene names: 125624685

Gene position: 1881308-1880841 (Counterclockwise)

Preceding gene: 125624686

Following gene: 125624684

Centisome position: 74.38

GC content: 36.97

Gene sequence:

>468_bases
ATGGTAAAAAATACAGAAGATAAGCCGCTAGCTCAGAATAAAAAAGCACGGCATGATTATGAAATTTATGAGACTTTTGA
GGCGGGAATTGTGCTGACAGGAACGGAGATTAAGTCGGTTCGGCAGGCAAAAATTCAGCTCAAAGATGGGTTTGCCAGAG
TTCGCAATGGCGAAGTTTGGCTATCAAATGTTCATATTGCGCCATTTGAGCAAGGAAATATTTTTAATGTTGAGGAGTTG
CGCACGAGAAAATTATTGCTCAATAAAAAAGAAATTGCTAAGATTGATAAAGAATTATCAGGAACAGGAATTACTTTTAT
TCCTTTAAAAGTTTATTTGAAAAATGGCTTTGCCAAAGTGCTGATGGGACTTGCTCGAGGTAAAAAAGATTATGATAAGC
GAGAAAGCCTTAAACGCAAAGAGCAAAATCGCGATATTGCAAGACAGCTTAAAGCTTACAATCGTTAA

Upstream 100 bases:

>100_bases
CAGCAACTAGATCTTTGGGGGCGAGAAAATCTGTAATTGCCTAACATTTTTGTGGTCTTATGGTAAAATTAAATTAAGAG
ATTCTTGGAGAATGATAAAT

Downstream 100 bases:

>100_bases
CAATGATTAAAAATACTGACAGAGCGACTGTCAGTATTTTTTTACTAGTTTGTCAGTAATTATAGAAAAGAATTCTAAAG
AAAAAAGTATTTACGTTCCA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MVKNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLSNVHIAPFEQGNIFNVEEL
RTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLKNGFAKVLMGLARGKKDYDKRESLKRKEQNRDIARQLKAYNR

Sequences:

>Translated_155_residues
MVKNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLSNVHIAPFEQGNIFNVEEL
RTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLKNGFAKVLMGLARGKKDYDKRESLKRKEQNRDIARQLKAYNR
>Mature_155_residues
MVKNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLSNVHIAPFEQGNIFNVEEL
RTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLKNGFAKVLMGLARGKKDYDKRESLKRKEQNRDIARQLKAYNR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=160, Percent_Identity=40, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17934; Mature: 17934

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVW
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEE
LSNVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLKNGFAKV
EEEEEECCCCCCCEECHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEHHHHHHHCCHHHH
LMGLARGKKDYDKRESLKRKEQNRDIARQLKAYNR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVW
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEE
LSNVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLKNGFAKV
EEEEEECCCCCCCEECHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEHHHHHHHCCHHHH
LMGLARGKKDYDKRESLKRKEQNRDIARQLKAYNR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]