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The map label for this gene is intTn5276 [H]

Identifier: 125624671

GI number: 125624671

Start: 1867667

End: 1868806

Strand: Reverse

Name: intTn5276 [H]

Synonym: llmg_1886

Alternate gene names: 125624671

Gene position: 1868806-1867667 (Counterclockwise)

Preceding gene: 125624672

Following gene: 125624670

Centisome position: 73.88

GC content: 30.09

Gene sequence:

>1140_bases
ATGTTTTATAAGCAACTTGATAGTGGAAAATATAGATACTTTGAAAAATACTTTGATGAAAAGAGGAATAAATGGCGACA
AGTAACGGTCACATTAAAATCAAAATCAAGGGTTGCTCAATCAGAAGCTAAAAATAGATTAGCAAGAAAAATAGAGCAAT
CAAAAAAAGTACCAACTGCTAACGAGCTTCAGGAACAAATCGCTCAAAATAAGACTGTACAAGAAATTTATGAAGAGTGG
GTTGTAATTAGAAAACAAGACGTTAAGCCAGGGAGTTTTGTAGCGGAGCAAATTTCTTTAAGAGGATTTATCGAAAAATT
TTCAAAATATAAAGTCTCGGAAGTAACGACTGCAGATATACAAAGCTATTTGATGGAATTAGATATTGCAAATTCAACAA
GAAAAAATCGTAGAATTTACATTAGAATTTTGTTCAGATATGCTGAAAATATCGGGTATATTGATTCAAACCCAGCTGAC
AAAGTAGTATTACCTAAAGTAAGGTTAGAAATTGAAACATTAGAACGGGCAAATGAAAAATTTTTAAGTAAAGAAGAAAT
GAGTTCTGTTTTGATATTTTGCAAATCTTATAAAAAAGATATAAGATACACTTTAGCTATGGAATTTATTTTTCTAACAG
GATGTAGATTCGGTGAATTTGCTTCTATTCGTTATCAAGATATTGATTTCAAAAATAAGTTACTAAGAATTGACCACACT
TTAGAATATCGTGTTGCAAAATATGATGATCGAGTTATTCAAACACCTAAAACGGTAGGTTCAATCCGCACTATTAGTTT
AAGTAATCGTTGCTTGGAAATTATTGATTATTTCCAAAAAAACTGTTTAGATGATAAGTTTGTTTTTGTAAATGCGGTTG
GTGGGATTTTCAGACAACCTGTATTTTATAAGTTTATTTGTGATAATTGTCAAAAAGTATTAGGGAATGAAAGAAAATAT
GGTATTCATTTATTGAGACATTCTCATGTATCATTACTCGTGGAACTTGGAGTTCCAATTAAAGCAATTATGGAACGGGT
TGGTCATAGGGATGAGTCAATTACTCTGAGGATTTATTCTCATATAAGTGGTACAATTAAAAATGAAATTAGTCAAAAGT
TGAACCAAATTAATCTCTAA

Upstream 100 bases:

>100_bases
AGAGAAAGTACAATTTAGAAAAAAGATAAAAGTAATATGCAGATATGATATAATATAAGTGCTGTATAGCTTTCTTTTAT
CTTTGGTAAAAGGAGGAAAT

Downstream 100 bases:

>100_bases
AATAACTAACCAAGAGACTAACCAAGAATTAACCAAAGCAAAAAGAATCATGAGGAAGATTAGGGAACATCAATTTTGAA
ATTCATCTCAAAACTCTTGT

Product: IntTn5276 protein

Products: NA

Alternate protein names: Int-TnX [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFYKQLDSGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANELQEQIAQNKTVQEIYEEW
VVIRKQDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPAD
KVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHT
LEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKY
GIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHISGTIKNEISQKLNQINL

Sequences:

>Translated_379_residues
MFYKQLDSGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANELQEQIAQNKTVQEIYEEW
VVIRKQDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPAD
KVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHT
LEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKY
GIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHISGTIKNEISQKLNQINL
>Mature_379_residues
MFYKQLDSGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANELQEQIAQNKTVQEIYEEW
VVIRKQDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPAD
KVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHT
LEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKY
GIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHISGTIKNEISQKLNQINL

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44623; Mature: 44623

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00028 ZINC_FINGER_C2H2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYKQLDSGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTA
CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCH
NELQEQIAQNKTVQEIYEEWVVIRKQDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADI
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPADKVVLPKVRLEIETLERANEK
HHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
FLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHT
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHEEECCH
LEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQP
HHHHHHHHCCHHHCCCHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC
VFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEH
HISGTIKNEISQKLNQINL
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFYKQLDSGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTA
CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCH
NELQEQIAQNKTVQEIYEEWVVIRKQDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADI
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPADKVVLPKVRLEIETLERANEK
HHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
FLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHT
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHEEECCH
LEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQP
HHHHHHHHCCHHHCCCHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC
VFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEH
HISGTIKNEISQKLNQINL
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10532372; 11337471 [H]