Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 125624663

GI number: 125624663

Start: 1861256

End: 1862233

Strand: Reverse

Name: nusB [H]

Synonym: llmg_1878

Alternate gene names: 125624663

Gene position: 1862233-1861256 (Counterclockwise)

Preceding gene: 125624664

Following gene: 125624662

Centisome position: 73.62

GC content: 35.17

Gene sequence:

>978_bases
ATGCCTAAAACGCTCACGCAACACCAAATTCGTCAACGATCGGTCCAAGTATTGTTTTCTTACGCTGTACAAAAGGAAAT
GGCAACCAGTGTCGTAAGTTCTTTTCGTGAAAATATTGAGAAGATAGAAACAGAACTTTCTCAAACGATTCGTTTTGACG
TTGATTTTCGTGATGAACGAATTACTGTTCGTAAGTTTCCTAAGGGACTATCTCAACCTTTAGAGGCAATCTACGAAATT
TACGAGATTCTCGGTGTTAAAGATATCGAAAAAACGAATGTCGCTAAAGCACTTGCTTTCATGCGTGATTTCGGTGGCTA
CGCTAAGAAAATGAATGAATACGAAGCAACAAATTTATTTTCAGGAATTATGGCTAACCTCAAACTTATTCGTTTGTTCC
AAATTGAGCTTGATGAAGAGCCAGTTGCACCAAAAGTATTAGAATTTTTCAAAAATCTGCCAGAAAATGCAACAACCGAG
CAGACTTTTGAAACTTTCCAAAAAACCTTCTCTTTCCTTCATGAAAATATTCTTGAAAAGTACACAAGCGATTTATTTGT
TCTAAATACCTTAAAAGAAGAGCTTGATGAGCAGTTACAGCAGGCTGAAACGACTGCCGAATCTCACTTGTCAGACCTTT
TAAAAGAAACAAAACATTTCGTACTTAACTACGACAATGATAGAGCAGAAGATCTGGAAGCTCCAGAATATTTTACTCAA
CTTGTTGATGGAGTCTTAGAGAAAAAAGAAGATTTAGAAATCAATATTTCTAAATATCTAGCAAAAAATTGGTCGTTTTC
ACGGTTAACACTTGTTGAACAAGCCATTCTTCAAGTTTCTACATATGAAATATTATTTACAGATACACCAAATGTCGTGG
CAGTCAATGAAGCTATTGAGCTTTCAAAAGACTTTAGCGATGAAAAATCTAGTCGATTTATTAATGGTGTTTTGACCAAC
TTCTTGAAAGAAGATTAA

Upstream 100 bases:

>100_bases
GAAATTGTTGTTGATGAAGTCAATATCCATGTTGTAGGAATTATGACTGAAAAACAACCAAAACCAGCGCTTGAAGACTT
GTTTGATGAGGGATTTTTTG

Downstream 100 bases:

>100_bases
TAAAAAAAGTTATTGGTAAAGTCTACCAGTAACTTTTTTTATTACGTTTTACTCTTAAATGTAGTTTAATAGAAACAAAA
GTTATCAAGTTTGTTTTTTA

Product: transcription termination protein nusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MPKTLTQHQIRQRSVQVLFSYAVQKEMATSVVSSFRENIEKIETELSQTIRFDVDFRDERITVRKFPKGLSQPLEAIYEI
YEILGVKDIEKTNVAKALAFMRDFGGYAKKMNEYEATNLFSGIMANLKLIRLFQIELDEEPVAPKVLEFFKNLPENATTE
QTFETFQKTFSFLHENILEKYTSDLFVLNTLKEELDEQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQ
LVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTN
FLKED

Sequences:

>Translated_325_residues
MPKTLTQHQIRQRSVQVLFSYAVQKEMATSVVSSFRENIEKIETELSQTIRFDVDFRDERITVRKFPKGLSQPLEAIYEI
YEILGVKDIEKTNVAKALAFMRDFGGYAKKMNEYEATNLFSGIMANLKLIRLFQIELDEEPVAPKVLEFFKNLPENATTE
QTFETFQKTFSFLHENILEKYTSDLFVLNTLKEELDEQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQ
LVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTN
FLKED
>Mature_324_residues
PKTLTQHQIRQRSVQVLFSYAVQKEMATSVVSSFRENIEKIETELSQTIRFDVDFRDERITVRKFPKGLSQPLEAIYEIY
EILGVKDIEKTNVAKALAFMRDFGGYAKKMNEYEATNLFSGIMANLKLIRLFQIELDEEPVAPKVLEFFKNLPENATTEQ
TFETFQKTFSFLHENILEKYTSDLFVLNTLKEELDEQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQL
VDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNF
LKED

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 37715; Mature: 37584

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTLTQHQIRQRSVQVLFSYAVQKEMATSVVSSFRENIEKIETELSQTIRFDVDFRDER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
ITVRKFPKGLSQPLEAIYEIYEILGVKDIEKTNVAKALAFMRDFGGYAKKMNEYEATNLF
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIMANLKLIRLFQIELDEEPVAPKVLEFFKNLPENATTEQTFETFQKTFSFLHENILEK
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YTSDLFVLNTLKEELDEQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCHHHHHH
LVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIE
HHHHHHCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHH
LSKDFSDEKSSRFINGVLTNFLKED
HHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PKTLTQHQIRQRSVQVLFSYAVQKEMATSVVSSFRENIEKIETELSQTIRFDVDFRDER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
ITVRKFPKGLSQPLEAIYEIYEILGVKDIEKTNVAKALAFMRDFGGYAKKMNEYEATNLF
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIMANLKLIRLFQIELDEEPVAPKVLEFFKNLPENATTEQTFETFQKTFSFLHENILEK
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YTSDLFVLNTLKEELDEQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCHHHHHH
LVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIE
HHHHHHCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEHHHHH
LSKDFSDEKSSRFINGVLTNFLKED
HHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]