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The map label for this gene is cspA [H]

Identifier: 125624636

GI number: 125624636

Start: 1827234

End: 1827434

Strand: Reverse

Name: cspA [H]

Synonym: llmg_1847

Alternate gene names: 125624636

Gene position: 1827434-1827234 (Counterclockwise)

Preceding gene: 125624637

Following gene: 125624635

Centisome position: 72.25

GC content: 31.84

Gene sequence:

>201_bases
ATGATAAATGGAACAGTAAAATGGTTCAATATGGACAAAGGCTATGGCTTTATTATTACAGAGGATATGCAGGATGTATT
TGCTTATCTACTGTCTATACAAGGAAATGGTTTTAAAAAGTATAATGAAGGTCAAAAGGTAACTTTTGATGTAACAATGA
CAGCTCGAGGGCGTTATGCTTCAAATATACATAAAGTATAA

Upstream 100 bases:

>100_bases
GGTACTATCAAGAGGTAGGTTTTGTCGTGAGTTTAAATGTTTCAGGAATGCACTTTTTCGCAAAATAGGATTTACAATTA
ATGCGAAAGGATGTATTAAG

Downstream 100 bases:

>100_bases
ATTTTGAAAATGAGAGATTGTCTCTCTTTTTTTATTTATTGCTGTTGTAATTAGATTTTAAAATGTTATACTAGTCTTGG
GAAGAATAGTTGCTTTCCTA

Product: cold shock-like protein cspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MINGTVKWFNMDKGYGFIITEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTARGRYASNIHKV

Sequences:

>Translated_66_residues
MINGTVKWFNMDKGYGFIITEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTARGRYASNIHKV
>Mature_66_residues
MINGTVKWFNMDKGYGFIITEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTARGRYASNIHKV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=52.3809523809524, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=47.6190476190476, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=47.6190476190476, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=46.969696969697, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=46.031746031746, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7590; Mature: 7590

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINGTVKWFNMDKGYGFIITEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTARGRYA
CCCCEEEEEECCCCCEEEEECCHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEECCCCC
SNIHKV
CCCCCC
>Mature Secondary Structure
MINGTVKWFNMDKGYGFIITEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTARGRYA
CCCCEEEEEECCCCCEEEEECCHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEECCCCC
SNIHKV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]