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The map label for this gene is rbfA [H]

Identifier: 125624581

GI number: 125624581

Start: 1769892

End: 1770251

Strand: Reverse

Name: rbfA [H]

Synonym: llmg_1791

Alternate gene names: 125624581

Gene position: 1770251-1769892 (Counterclockwise)

Preceding gene: 125624582

Following gene: 125624579

Centisome position: 69.98

GC content: 35.56

Gene sequence:

>360_bases
ATGGGAAATTCTTTTCGTAGCGACCGTGTCGCAGTAGAGATTCAACGCGAAATCAATGATATTTTGCGCAATAAAGTTCG
CGATCCACGTGTACAAGATGTTAATATTACTGATGTTCAATTGACAGGCGATTTGAGTCAAGCGACTGTTTATTATAGTC
TCTTGTCAAACTTAGCTTCTGACAATGAAAAAGCTGCCACTGCTTTGAAAAAAGCAACTGGACTTTTCAAAAGTGAATTG
GCAAAACGAATGACTATTTTTAAAATTCCAGATTTAACTTTTGCAAAAGATGAATCTGTTGAATATGGTTCAAAAATTGA
CGAGCTCTTACGTGGGCTTAACGATAAATCAGAATATTAA

Upstream 100 bases:

>100_bases
CTATTTTCAATGATTTCTAGGACTATTGACTCACTTAAAAAAATGTAAAAATAGTTTCATACTTATTTCTTACATTTTGA
AATAAATTAGGAGGAAAAAA

Downstream 100 bases:

>100_bases
TTAAAAAGTTACTGACAGAAAAAGTTGAATTTGTTCTCTATAGAGATAGATTCTGTAACTTCTGTCAGTAATTTTTTTGT
CTTAAAATTACTGACAAATT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSEL
AKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNDKSEY

Sequences:

>Translated_119_residues
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSEL
AKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNDKSEY
>Mature_118_residues
GNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSELA
KRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNDKSEY

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=36.283185840708, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13417; Mature: 13286

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLAS
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
DNEKAATALKKATGLFKSELAKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNDKSEY
CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLAS
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
DNEKAATALKKATGLFKSELAKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNDKSEY
CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]