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The map label for this gene is yfhH [C]

Identifier: 125624530

GI number: 125624530

Start: 1720098

End: 1720853

Strand: Reverse

Name: yfhH [C]

Synonym: llmg_1740

Alternate gene names: 125624530

Gene position: 1720853-1720098 (Counterclockwise)

Preceding gene: 125624531

Following gene: 125624529

Centisome position: 68.03

GC content: 35.45

Gene sequence:

>756_bases
ATGATTGATTTCTTGCCCGAACAAGTTCGAACGCTCAATGAACTAGAAACTGCGACATTTAATTTTATCTTATCTAATTT
ATCAAGTATTGATAAAATGTCAGTCAGACAGCTTGCACAAGCTGTCCATGTTTCCACAGCAACAGTTATGCGCATGAACA
GAAAACTTGGTTTTGAGGGCTGGGTAGAACTAAAATATTATCTTAAAAACCAAAATCAACTGACAGAAATTCCAGTTAAT
TACTATGAAAATTTATTACAACTCGACCTATTTTTACGAAAAATAACCTCTAAGGAAGCGGGAAGAAAATTAGAAGAAGC
TGTCAAATTAATTCGAGAAGCTCGTTATATTATTTTTATTGGAGTAGGTTCTTCAGGAGCTTTAGCTGAATATGGTGCCC
GCTATTTTACAAATATTGGCTTAGAATCTTATGCCATTTCTGATCCTTATCAAGCCGTTAAGGGCAAAGGTGCACCAGAT
GTTTTAAGCATTGTCTTATCCGCTTCGGGCGAAACAGACAAGATTATTGAACGAGTTGTCAAACTAAGAGAGGAAGCACC
AGCAAAGATTATTTCAATTACAAATCATCCAGAAACGACCTTATCCAAACTTTCAAATATAAATTTAACTTATGGATTCC
AAACGGAATATTCCGCCTATGACCCACTTGAAAATTTGACTTCTCAGCTCCCAGTCATTGCTTTTATTGAAATACTAGCT
CATCAGGCAATGGAAAAAGCTGATAAATGTAACTAA

Upstream 100 bases:

>100_bases
CTGTCAGTAATTTATTTATTAAATAAAAATCGATACTGATGAGTTCGCTCAGGATAACAAATAAATAATCAACAACATAA
GAAAGGTTGGGTCAGTAAAA

Downstream 100 bases:

>100_bases
TCCTGTAACAGGTAACAAAGATAGAAAAGCCCCTTGCAAAAAAAAATTGTAAGGGGTATTATTGTATTGTAAGCGGTTTA
ATTAAAAGAGTACAGTCTTC

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MIDFLPEQVRTLNELETATFNFILSNLSSIDKMSVRQLAQAVHVSTATVMRMNRKLGFEGWVELKYYLKNQNQLTEIPVN
YYENLLQLDLFLRKITSKEAGRKLEEAVKLIREARYIIFIGVGSSGALAEYGARYFTNIGLESYAISDPYQAVKGKGAPD
VLSIVLSASGETDKIIERVVKLREEAPAKIISITNHPETTLSKLSNINLTYGFQTEYSAYDPLENLTSQLPVIAFIEILA
HQAMEKADKCN

Sequences:

>Translated_251_residues
MIDFLPEQVRTLNELETATFNFILSNLSSIDKMSVRQLAQAVHVSTATVMRMNRKLGFEGWVELKYYLKNQNQLTEIPVN
YYENLLQLDLFLRKITSKEAGRKLEEAVKLIREARYIIFIGVGSSGALAEYGARYFTNIGLESYAISDPYQAVKGKGAPD
VLSIVLSASGETDKIIERVVKLREEAPAKIISITNHPETTLSKLSNINLTYGFQTEYSAYDPLENLTSQLPVIAFIEILA
HQAMEKADKCN
>Mature_251_residues
MIDFLPEQVRTLNELETATFNFILSNLSSIDKMSVRQLAQAVHVSTATVMRMNRKLGFEGWVELKYYLKNQNQLTEIPVN
YYENLLQLDLFLRKITSKEAGRKLEEAVKLIREARYIIFIGVGSSGALAEYGARYFTNIGLESYAISDPYQAVKGKGAPD
VLSIVLSASGETDKIIERVVKLREEAPAKIISITNHPETTLSKLSNINLTYGFQTEYSAYDPLENLTSQLPVIAFIEILA
HQAMEKADKCN

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 28250; Mature: 28250

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFLPEQVRTLNELETATFNFILSNLSSIDKMSVRQLAQAVHVSTATVMRMNRKLGFEG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WVELKYYLKNQNQLTEIPVNYYENLLQLDLFLRKITSKEAGRKLEEAVKLIREARYIIFI
HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GVGSSGALAEYGARYFTNIGLESYAISDPYQAVKGKGAPDVLSIVLSASGETDKIIERVV
EECCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
KLREEAPAKIISITNHPETTLSKLSNINLTYGFQTEYSAYDPLENLTSQLPVIAFIEILA
HHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCHHHHHHHHHH
HQAMEKADKCN
HHHHHHHHCCC
>Mature Secondary Structure
MIDFLPEQVRTLNELETATFNFILSNLSSIDKMSVRQLAQAVHVSTATVMRMNRKLGFEG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WVELKYYLKNQNQLTEIPVNYYENLLQLDLFLRKITSKEAGRKLEEAVKLIREARYIIFI
HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GVGSSGALAEYGARYFTNIGLESYAISDPYQAVKGKGAPDVLSIVLSASGETDKIIERVV
EECCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
KLREEAPAKIISITNHPETTLSKLSNINLTYGFQTEYSAYDPLENLTSQLPVIAFIEILA
HHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCHHHHHHHHHH
HQAMEKADKCN
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]