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The map label for this gene is sdaB [H]

Identifier: 125624524

GI number: 125624524

Start: 1710920

End: 1711591

Strand: Reverse

Name: sdaB [H]

Synonym: llmg_1733

Alternate gene names: 125624524

Gene position: 1711591-1710920 (Counterclockwise)

Preceding gene: 125624525

Following gene: 125624523

Centisome position: 67.67

GC content: 38.84

Gene sequence:

>672_bases
ATGGATAATTTAAGATATAAAAGTGTCTTTGACATCATTGGTCCAGTGATGATTGGACCTTCAAGCTCGCACACAGCTGG
TGCTGCTCGAATTGGTAAAATTGTACGTTCTATTTTCGGTGAACTTCCAGAAAAATTGGAGATTCATCTTTATGAATCTT
TTGCTAAAACCTATCGGGGTCATGGAACAGATGTTGCTCTTGTTGCAGGTGTTTTAGGAATGGATACAGATGATGAACGT
CTGCCAATGGCGCCTCAGCTTGCTTTTGAACAAGGAATGGAAATTTCTTATGTTCCACATCCAGAAGAAAAAGCAGAACA
TCCCAATACCGCACGTTTAATCGCCAAAAAAGGGGATCGAACAATGACCGTGACTGGAATTTCAATCGGTGGTGGAATGA
TTCAAGTGACAGAATTGAATGGATTTGATATCGCAATTTCGGCTGGTGTTCCGACATTTGTGGTCATTCATGAAGACGTT
CCAGGGATGATTGCTAGAGTTTCTAGTGTCCTTTCAGAACATCAAATTAATATCGCACAAATGAATGTAACCAGAGAAGC
TAAGGGTGAAAAAGCGATTATGATTTTAGAAGTTGATATACCAAATGTTAAGGAAGTAATTGAGGAAATGAAACTTATTC
CTCGTTTGCACGCCGTTAATTTCTTTAATTAA

Upstream 100 bases:

>100_bases
GGAGCTATTTTTTTTTGCCTGAAAAAGCTTGAAAATTATGTTATGATATTTGAAGATAAAAGATAGTTTAAAAACTATCT
TTGTAAGAACTGAGGTTTAA

Downstream 100 bases:

>100_bases
AAGCAGTATAGGAATAAATATGTTTAAAAATATAGAAGAATTAATCGAGGATTCTAAAAATTATTCCTCGGTCACAGAAT
TAATGATTGCCATTGAAATG

Product: L-serine dehydratase beta subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDNLRYKSVFDIIGPVMIGPSSSHTAGAARIGKIVRSIFGELPEKLEIHLYESFAKTYRGHGTDVALVAGVLGMDTDDER
LPMAPQLAFEQGMEISYVPHPEEKAEHPNTARLIAKKGDRTMTVTGISIGGGMIQVTELNGFDIAISAGVPTFVVIHEDV
PGMIARVSSVLSEHQINIAQMNVTREAKGEKAIMILEVDIPNVKEVIEEMKLIPRLHAVNFFN

Sequences:

>Translated_223_residues
MDNLRYKSVFDIIGPVMIGPSSSHTAGAARIGKIVRSIFGELPEKLEIHLYESFAKTYRGHGTDVALVAGVLGMDTDDER
LPMAPQLAFEQGMEISYVPHPEEKAEHPNTARLIAKKGDRTMTVTGISIGGGMIQVTELNGFDIAISAGVPTFVVIHEDV
PGMIARVSSVLSEHQINIAQMNVTREAKGEKAIMILEVDIPNVKEVIEEMKLIPRLHAVNFFN
>Mature_223_residues
MDNLRYKSVFDIIGPVMIGPSSSHTAGAARIGKIVRSIFGELPEKLEIHLYESFAKTYRGHGTDVALVAGVLGMDTDDER
LPMAPQLAFEQGMEISYVPHPEEKAEHPNTARLIAKKGDRTMTVTGISIGGGMIQVTELNGFDIAISAGVPTFVVIHEDV
PGMIARVSSVLSEHQINIAQMNVTREAKGEKAIMILEVDIPNVKEVIEEMKLIPRLHAVNFFN

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24374; Mature: 24374

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLRYKSVFDIIGPVMIGPSSSHTAGAARIGKIVRSIFGELPEKLEIHLYESFAKTYRG
CCCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
HGTDVALVAGVLGMDTDDERLPMAPQLAFEQGMEISYVPHPEEKAEHPNTARLIAKKGDR
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHHCCCCHHEEEEECCCC
TMTVTGISIGGGMIQVTELNGFDIAISAGVPTFVVIHEDVPGMIARVSSVLSEHQINIAQ
EEEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEE
MNVTREAKGEKAIMILEVDIPNVKEVIEEMKLIPRLHAVNFFN
EEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDNLRYKSVFDIIGPVMIGPSSSHTAGAARIGKIVRSIFGELPEKLEIHLYESFAKTYRG
CCCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
HGTDVALVAGVLGMDTDDERLPMAPQLAFEQGMEISYVPHPEEKAEHPNTARLIAKKGDR
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHHCCCCHHEEEEECCCC
TMTVTGISIGGGMIQVTELNGFDIAISAGVPTFVVIHEDVPGMIARVSSVLSEHQINIAQ
EEEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEE
MNVTREAKGEKAIMILEVDIPNVKEVIEEMKLIPRLHAVNFFN
EEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]