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The map label for this gene is xerD [H]

Identifier: 125624456

GI number: 125624456

Start: 1633481

End: 1634455

Strand: Reverse

Name: xerD [H]

Synonym: llmg_1657

Alternate gene names: 125624456

Gene position: 1634455-1633481 (Counterclockwise)

Preceding gene: 125624457

Following gene: 125624454

Centisome position: 64.62

GC content: 29.13

Gene sequence:

>975_bases
ATGGAAATTTCAATCCAATCAGCAATTCAAGAAATGCTTTTTGACAATAAAGCAAGAGGATTGTCGAAAAATACAATTAT
ATTCAGAGAAAAAATACTAAAGATTTTCTCTGTTTTTTTGTGCCAAAATGATATTTTAAACATTAACGAAATCAAACCAA
TTCATATAAAACAATATTTAGTTGACAGACTAGAATGTGGTTACTCTGAGACAACTGTTAATGGGCATTTAAGGGTTATT
AGGGCGCTATTTTCATATTGTATTAATGAAGAATACATTAGGTATGAGGAAGCGCCTATACACCGTGTTAAATGGATTAA
AGAGAAGAAGATGATTGTAAATACATTTACAGATTCAGAGATAAAAAGAATGCTCCATTATACAAGAAAAAGAACCTTTC
ATACAATCAAGAAAACTGGAAAAGGAAGAACTGGATTTTGTACAAAATTTGTGAATGAGAGAAATTACTTGCTAATACTT
ATACTTACAGATACTGGTATGAGAATAAATGAAGCATTGAGCCTAAAATTAGAAAATATTAATGATTCCCAAATTATCAT
AAAAAATGGTAAAGGAAAAAAAGATAGAATTGTTCATTGTTCACCACTTGTTTATAAACAGTATCTGAAATACAATAGGG
CAAAAGAAAATTATTTTTTAAGTAATGGGATAGTACCCATTGAAAATATATTTGTAACTAAGTTTGGGAAAAAATATGAT
TATAGGCTAGCAGAAAAAGAAATATATAAAATAGGAAAAGCGGTGAACATTCGTGACACTATCCGTATCTCACCTCACAC
ATTTAGACATTATTTTGCTCAAAAATTAGTACGTGAGAACGTTGATATTTATATGATTCAAAAGTTACTGGGACACGCTA
GCATCAAGACTACTGAGATTTATCTTAGGAGTTTAAATATCGAGAATGAAATTAACAAAGTCATCAAATACAGTCCTTTG
CAGAATTTAGATTAA

Upstream 100 bases:

>100_bases
GAAATATTAACCCTTAAAAAGTACATTTAGTGCGGTATCTAAGCCGTTTTTGAAAAAACATTTATTGTTGTTAAATCTAG
TAAAAACAGAGGAAAACAAC

Downstream 100 bases:

>100_bases
AATAAATTTTTAGATAGTGTGGATGGGATAACCTACTAGAAAACAATAATTTTTGACTTATTATATCTATAAAATGAATG
TGAATTGGTTTTATATCCTT

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MEISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLVDRLECGYSETTVNGHLRVI
RALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLIL
ILTDTGMRINEALSLKLENINDSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYD
YRLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLRSLNIENEINKVIKYSPL
QNLD

Sequences:

>Translated_324_residues
MEISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLVDRLECGYSETTVNGHLRVI
RALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLIL
ILTDTGMRINEALSLKLENINDSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYD
YRLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLRSLNIENEINKVIKYSPL
QNLD
>Mature_324_residues
MEISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLVDRLECGYSETTVNGHLRVI
RALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLIL
ILTDTGMRINEALSLKLENINDSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYD
YRLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLRSLNIENEINKVIKYSPL
QNLD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=290, Percent_Identity=25.1724137931034, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38315; Mature: 38315

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYL
CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VDRLECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSE
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHEEEECCHHH
IKRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEEECCCCEECCEEEEEEECC
NDSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYD
CCCEEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCEEECCCCCCHHHHEEECCCCCCC
YRLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEI
HHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHEE
YLRSLNIENEINKVIKYSPLQNLD
EEEECCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYL
CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VDRLECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSE
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHEEEECCHHH
IKRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEEECCCCEECCEEEEEEECC
NDSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYD
CCCEEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCEEECCCCCCHHHHEEECCCCCCC
YRLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEI
HHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHEE
YLRSLNIENEINKVIKYSPLQNLD
EEEECCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA