Click here to switch to the map view.

The map label for this gene is nagD [H]

Identifier: 125624226

GI number: 125624226

Start: 1382610

End: 1383383

Strand: Reverse

Name: nagD [H]

Synonym: llmg_1414

Alternate gene names: 125624226

Gene position: 1383383-1382610 (Counterclockwise)

Preceding gene: 125624227

Following gene: 125624225

Centisome position: 54.69

GC content: 38.11

Gene sequence:

>774_bases
ATGACAAATAAAAAATATGGTGGTTACTTGATTGACCTTGATGGAACAATTTACTTAGGTAATAAACGGATTCCTGCCGG
TGAAAATTTCATTCACCGTCTGCAAGAAGCCAAAATACCTTATCTTTTAGTGACTAATAACACCACTAAGACACCGCGCG
TGGTTCAAAAACGTTTGAGTCAACACTTTAATATTGAGACTCCACTTGAAACAATTTATACTGCAAGCCTAGCCACTGTT
GATTATATGAACGATTTGGGTTTAGAAAAAACAGTCTATATTATTGGTGAAGATGGACTAAAAGAGGCAATCTATGAAGC
TGGTTATAAAAAAGACCGTGAAAATCCAGCTTATGTTGTTGTTGCTTTAGATACTGATTTAACTTATGAAATGTTGGTTT
TGGCGACGCTTGCCATTCATAAGGGGGCAAAATTTATTGGAACAAATCCAGATTTAAACTTGCCAAATGAACGTGGTTTG
ACTCCGGGTGCTGGAGCATTGATTAAAATGCTTGAAGCAGCAACACGAGTTGAAGCGACAATTATTGGGAAACCTGAAGC
AATCATTGCTGACAAAGCCGTTGAAAAACTCGGACTTCCTAAGTCTGACTTGTTGATGGTCGGAGATAATTATCTGACAG
ATATTCATACAGGAATTAATAATGGTATTGATAGTCTGCTTGTGACGACAGGATTTACCAAAGCTGAAGAAGTACCAAAT
CTTCCAGTTCCGCCAACTTATGTGGTGTCTAGTTTGGACGAGTGGGAAGTCTAA

Upstream 100 bases:

>100_bases
TTTTAATGACGGAAGCACTCAAATTGAAATTCATTGGGGGAAAATTTACTGACAGTTCTGTCAGTAGATTTTTAATGATA
AAAATTAGAAGAGAATAAAA

Downstream 100 bases:

>100_bases
ACTTACCGTCAACTCTGTCATTAATTTTATGACTTACAAAATAGTTACTGACCATTTTATCAGCAGTTCTTGCAGGTTTT
GGTTTACTGTGGTTCTGCTA

Product: putative N-acetylglucosamine catabolic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTNKKYGGYLIDLDGTIYLGNKRIPAGENFIHRLQEAKIPYLLVTNNTTKTPRVVQKRLSQHFNIETPLETIYTASLATV
DYMNDLGLEKTVYIIGEDGLKEAIYEAGYKKDRENPAYVVVALDTDLTYEMLVLATLAIHKGAKFIGTNPDLNLPNERGL
TPGAGALIKMLEAATRVEATIIGKPEAIIADKAVEKLGLPKSDLLMVGDNYLTDIHTGINNGIDSLLVTTGFTKAEEVPN
LPVPPTYVVSSLDEWEV

Sequences:

>Translated_257_residues
MTNKKYGGYLIDLDGTIYLGNKRIPAGENFIHRLQEAKIPYLLVTNNTTKTPRVVQKRLSQHFNIETPLETIYTASLATV
DYMNDLGLEKTVYIIGEDGLKEAIYEAGYKKDRENPAYVVVALDTDLTYEMLVLATLAIHKGAKFIGTNPDLNLPNERGL
TPGAGALIKMLEAATRVEATIIGKPEAIIADKAVEKLGLPKSDLLMVGDNYLTDIHTGINNGIDSLLVTTGFTKAEEVPN
LPVPPTYVVSSLDEWEV
>Mature_256_residues
TNKKYGGYLIDLDGTIYLGNKRIPAGENFIHRLQEAKIPYLLVTNNTTKTPRVVQKRLSQHFNIETPLETIYTASLATVD
YMNDLGLEKTVYIIGEDGLKEAIYEAGYKKDRENPAYVVVALDTDLTYEMLVLATLAIHKGAKFIGTNPDLNLPNERGLT
PGAGALIKMLEAATRVEATIIGKPEAIIADKAVEKLGLPKSDLLMVGDNYLTDIHTGINNGIDSLLVTTGFTKAEEVPNL
PVPPTYVVSSLDEWEV

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily [H]

Homologues:

Organism=Homo sapiens, GI10092677, Length=247, Percent_Identity=24.2914979757085, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI108796653, Length=260, Percent_Identity=26.1538461538462, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI14149777, Length=246, Percent_Identity=25.2032520325203, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1786890, Length=248, Percent_Identity=28.6290322580645, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17558880, Length=259, Percent_Identity=25.4826254826255, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562458, Length=259, Percent_Identity=25.4826254826255, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17560956, Length=259, Percent_Identity=25.4826254826255, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562356, Length=255, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193210059, Length=255, Percent_Identity=24.7058823529412, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319965, Length=240, Percent_Identity=27.0833333333333, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24666141, Length=256, Percent_Identity=23.4375, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24656326, Length=258, Percent_Identity=22.8682170542636, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19920940, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI18859765, Length=250, Percent_Identity=24, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24641437, Length=238, Percent_Identity=23.109243697479, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28222; Mature: 28091

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKKYGGYLIDLDGTIYLGNKRIPAGENFIHRLQEAKIPYLLVTNNTTKTPRVVQKRLS
CCCCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
QHFNIETPLETIYTASLATVDYMNDLGLEKTVYIIGEDGLKEAIYEAGYKKDRENPAYVV
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEE
VALDTDLTYEMLVLATLAIHKGAKFIGTNPDLNLPNERGLTPGAGALIKMLEAATRVEAT
EEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEE
IIGKPEAIIADKAVEKLGLPKSDLLMVGDNYLTDIHTGINNGIDSLLVTTGFTKAEEVPN
EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHCCCCCCHHHCCC
LPVPPTYVVSSLDEWEV
CCCCHHHHHHCCHHCCC
>Mature Secondary Structure 
TNKKYGGYLIDLDGTIYLGNKRIPAGENFIHRLQEAKIPYLLVTNNTTKTPRVVQKRLS
CCCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
QHFNIETPLETIYTASLATVDYMNDLGLEKTVYIIGEDGLKEAIYEAGYKKDRENPAYVV
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEE
VALDTDLTYEMLVLATLAIHKGAKFIGTNPDLNLPNERGLTPGAGALIKMLEAATRVEAT
EEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEE
IIGKPEAIIADKAVEKLGLPKSDLLMVGDNYLTDIHTGINNGIDSLLVTTGFTKAEEVPN
EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHCCCCCCHHHCCC
LPVPPTYVVSSLDEWEV
CCCCHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]