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The map label for this gene is ltrC

Identifier: 125624193

GI number: 125624193

Start: 1350253

End: 1351905

Strand: Reverse

Name: ltrC

Synonym: llmg_1376

Alternate gene names: NA

Gene position: 1351905-1350253 (Counterclockwise)

Preceding gene: 125624194

Following gene: 125624192

Centisome position: 53.45

GC content: 38.6

Gene sequence:

>1653_bases
ATGACCACTCAATCACCAGAAGTTGAACCCTTGTTTCATGGTTCAGACCGCTCATTTGACAAGTTTGAACTACAAAAAGA
CCCTACAAATGGTGTAGGGCTTGGCTTTGGAATTTACCTCACAAATCATGAAGAGATAGCTAAACGCTATGCTCCAGATG
GAGGAACAATTTATAAAGTTGATCCTTCAATAATTGAAGGAAAAGCTGTAAGTGCGGTTTCTTTAACCCTCTCACACGAA
ACGGTCACGCGGATGATCTCATCTATTGCGAAAGATGAAATTGAAGAAGAGGATTATCCTTATATTCTTTCTGAAGGAGG
AGATGAACCTCATGAAGATTGGGATAATTATAACGCCTCAATTGCCTCTAAAATGGCTGCTAGTTTTCTGGAATATGAGG
ACAATGACGTTGATGTGATCAATCAAATTTATCAAGTAATCGGACGAGAACCAGAAGTTGCGCCTCGATTATTAAAGGCG
CTTAAAGATGAGGATATTACTCATGCTAGTCGAACAATTGCAGGTGGGGACTCTTCTCAGCCATCCCTTGAATATATCGT
TTTTAATCCTGAAAATATCAAAATACTTTCAAAAGAAACGAACAAAGTCCAAGCTGATCATGACCTTCAGTCAATCATTA
AAAATAAAGATTATGCCGCATTATCCGAACATCTCAAAAGTGGAGTAAAAGATTATTTAAAAAGTGATGTCTTCAAAAAA
TTCCTCAATTTCATTTCTAATTTTCACCAATACTCACAAAAAAATGTTCGGCTTATTTTAGCTCAAAACCTTGAAGCAAA
ATATGTCGCCTCTTATAAAAAATGGAGTGATGAGCTTGACAATCCTGTCAAGAAAGGGGGGAAAGCCACTTATATTTACG
CCCCCAATCCTGTTATTAAAAGAGACGAGCAACGTCGGCCGATTGTTGATGAAAACGGAGAAGTCGTCAAGGTCATACAC
TATAAACTTGTTCCAGTCTTTGCGGACAATCAAACCATTAATCCAGAAAACCTCCCTCAACCTGTTTATGACCTGTCTAA
AGATTTGGATGACCCTAAAGCATTCATTCAACTTTATCGTTCGCTAGAAGCAATTGCTCCAGTTCCAATTGAATTGATGG
AAATGAATGACCCTGATATCAAAGGATATTTCAGTCCTAAAGATCAAATAATTGTTCTCCAACCAGGCTTAGGAGAAGTG
ATGACTTTGCGAACAATGATTCATGAAATGACACATGCCATGTTGCATACTGACTCTAAAGCAAGGTTTGGAGATTCAAC
GTATCGCAGACAAGAGTTTGAAGCAGAATCTGTCGCTTATATCGTTTCTAAACATCTAGGAATTGATACCAGCGAGTACA
GTTTTGGCTATCTTTCTTCATGGACACAAGGCGGAAATAGTATTGAGTCCTTTGAAAAATCTCTTGAAACAATCAGTGTT
CAAGCACAAACACTCATCAACCGTTTAGAACAAAGTCTCACAAAAGTTTATACCTTAGATGCGCCTGAAAATAAATTTGA
AAAGCGCCTCCAGGAAGCGAGAGATAAAGGTAAAACTCAAAGGGCTGAACCTGTTATTACCCCTCAACCTGTGGCAGAAA
AAACGGAGCAAGAAGAATCCCCAAAAGCGAACCGTCTCCAACGCAATCTTTAA

Upstream 100 bases:

>100_bases
AACCAATGATGCTCCTCAACACTCACAATCAAAATCACACTCAATATAAGCAAAGCAAGAATAATCAAATTCTTGCTTTT
TATTTTTGGAAAGGAAAAAA

Downstream 100 bases:

>100_bases
ATCGGCGGATGGGGACGGCCAATAAAAGTTTACTAAGCAGCGTAAGAAAACAACCCCAGGAGGACACACAAGATGTCAAT
GAATGAAGCAGATTTTAAAC

Product: LtrC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTTQSPEVEPLFHGSDRSFDKFELQKDPTNGVGLGFGIYLTNHEEIAKRYAPDGGTIYKVDPSIIEGKAVSAVSLTLSHE
TVTRMISSIAKDEIEEEDYPYILSEGGDEPHEDWDNYNASIASKMAASFLEYEDNDVDVINQIYQVIGREPEVAPRLLKA
LKDEDITHASRTIAGGDSSQPSLEYIVFNPENIKILSKETNKVQADHDLQSIIKNKDYAALSEHLKSGVKDYLKSDVFKK
FLNFISNFHQYSQKNVRLILAQNLEAKYVASYKKWSDELDNPVKKGGKATYIYAPNPVIKRDEQRRPIVDENGEVVKVIH
YKLVPVFADNQTINPENLPQPVYDLSKDLDDPKAFIQLYRSLEAIAPVPIELMEMNDPDIKGYFSPKDQIIVLQPGLGEV
MTLRTMIHEMTHAMLHTDSKARFGDSTYRRQEFEAESVAYIVSKHLGIDTSEYSFGYLSSWTQGGNSIESFEKSLETISV
QAQTLINRLEQSLTKVYTLDAPENKFEKRLQEARDKGKTQRAEPVITPQPVAEKTEQEESPKANRLQRNL

Sequences:

>Translated_550_residues
MTTQSPEVEPLFHGSDRSFDKFELQKDPTNGVGLGFGIYLTNHEEIAKRYAPDGGTIYKVDPSIIEGKAVSAVSLTLSHE
TVTRMISSIAKDEIEEEDYPYILSEGGDEPHEDWDNYNASIASKMAASFLEYEDNDVDVINQIYQVIGREPEVAPRLLKA
LKDEDITHASRTIAGGDSSQPSLEYIVFNPENIKILSKETNKVQADHDLQSIIKNKDYAALSEHLKSGVKDYLKSDVFKK
FLNFISNFHQYSQKNVRLILAQNLEAKYVASYKKWSDELDNPVKKGGKATYIYAPNPVIKRDEQRRPIVDENGEVVKVIH
YKLVPVFADNQTINPENLPQPVYDLSKDLDDPKAFIQLYRSLEAIAPVPIELMEMNDPDIKGYFSPKDQIIVLQPGLGEV
MTLRTMIHEMTHAMLHTDSKARFGDSTYRRQEFEAESVAYIVSKHLGIDTSEYSFGYLSSWTQGGNSIESFEKSLETISV
QAQTLINRLEQSLTKVYTLDAPENKFEKRLQEARDKGKTQRAEPVITPQPVAEKTEQEESPKANRLQRNL
>Mature_549_residues
TTQSPEVEPLFHGSDRSFDKFELQKDPTNGVGLGFGIYLTNHEEIAKRYAPDGGTIYKVDPSIIEGKAVSAVSLTLSHET
VTRMISSIAKDEIEEEDYPYILSEGGDEPHEDWDNYNASIASKMAASFLEYEDNDVDVINQIYQVIGREPEVAPRLLKAL
KDEDITHASRTIAGGDSSQPSLEYIVFNPENIKILSKETNKVQADHDLQSIIKNKDYAALSEHLKSGVKDYLKSDVFKKF
LNFISNFHQYSQKNVRLILAQNLEAKYVASYKKWSDELDNPVKKGGKATYIYAPNPVIKRDEQRRPIVDENGEVVKVIHY
KLVPVFADNQTINPENLPQPVYDLSKDLDDPKAFIQLYRSLEAIAPVPIELMEMNDPDIKGYFSPKDQIIVLQPGLGEVM
TLRTMIHEMTHAMLHTDSKARFGDSTYRRQEFEAESVAYIVSKHLGIDTSEYSFGYLSSWTQGGNSIESFEKSLETISVQ
AQTLINRLEQSLTKVYTLDAPENKFEKRLQEARDKGKTQRAEPVITPQPVAEKTEQEESPKANRLQRNL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62310; Mature: 62178

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQSPEVEPLFHGSDRSFDKFELQKDPTNGVGLGFGIYLTNHEEIAKRYAPDGGTIYKV
CCCCCCCCCCEECCCCCCCCCEEECCCCCCCCEEEEEEEEECHHHHHHHHCCCCCEEEEE
DPSIIEGKAVSAVSLTLSHETVTRMISSIAKDEIEEEDYPYILSEGGDEPHEDWDNYNAS
CCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHCCCHH
IASKMAASFLEYEDNDVDVINQIYQVIGREPEVAPRLLKALKDEDITHASRTIAGGDSSQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCC
PSLEYIVFNPENIKILSKETNKVQADHDLQSIIKNKDYAALSEHLKSGVKDYLKSDVFKK
CCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FLNFISNFHQYSQKNVRLILAQNLEAKYVASYKKWSDELDNPVKKGGKATYIYAPNPVIK
HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCC
RDEQRRPIVDENGEVVKVIHYKLVPVFADNQTINPENLPQPVYDLSKDLDDPKAFIQLYR
CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
SLEAIAPVPIELMEMNDPDIKGYFSPKDQIIVLQPGLGEVMTLRTMIHEMTHAMLHTDSK
HHHHCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
ARFGDSTYRRQEFEAESVAYIVSKHLGIDTSEYSFGYLSSWTQGGNSIESFEKSLETISV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
QAQTLINRLEQSLTKVYTLDAPENKFEKRLQEARDKGKTQRAEPVITPQPVAEKTEQEES
HHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
PKANRLQRNL
CCHHHHHCCC
>Mature Secondary Structure 
TTQSPEVEPLFHGSDRSFDKFELQKDPTNGVGLGFGIYLTNHEEIAKRYAPDGGTIYKV
CCCCCCCCCEECCCCCCCCCEEECCCCCCCCEEEEEEEEECHHHHHHHHCCCCCEEEEE
DPSIIEGKAVSAVSLTLSHETVTRMISSIAKDEIEEEDYPYILSEGGDEPHEDWDNYNAS
CCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHCCCHH
IASKMAASFLEYEDNDVDVINQIYQVIGREPEVAPRLLKALKDEDITHASRTIAGGDSSQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCC
PSLEYIVFNPENIKILSKETNKVQADHDLQSIIKNKDYAALSEHLKSGVKDYLKSDVFKK
CCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FLNFISNFHQYSQKNVRLILAQNLEAKYVASYKKWSDELDNPVKKGGKATYIYAPNPVIK
HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCC
RDEQRRPIVDENGEVVKVIHYKLVPVFADNQTINPENLPQPVYDLSKDLDDPKAFIQLYR
CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
SLEAIAPVPIELMEMNDPDIKGYFSPKDQIIVLQPGLGEVMTLRTMIHEMTHAMLHTDSK
HHHHCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
ARFGDSTYRRQEFEAESVAYIVSKHLGIDTSEYSFGYLSSWTQGGNSIESFEKSLETISV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
QAQTLINRLEQSLTKVYTLDAPENKFEKRLQEARDKGKTQRAEPVITPQPVAEKTEQEES
HHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
PKANRLQRNL
CCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10475962; 12004073 [H]