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The map label for this gene is rgrB [H]

Identifier: 125623896

GI number: 125623896

Start: 1024931

End: 1025638

Strand: Direct

Name: rgrB [H]

Synonym: llmg_1065

Alternate gene names: 125623896

Gene position: 1024931-1025638 (Clockwise)

Preceding gene: 125623895

Following gene: 125623900

Centisome position: 40.52

GC content: 37.15

Gene sequence:

>708_bases
ATGGCAAGAAAATCAGTACCAAATTATGTAAAAATACATGATGCCTTAAAAGATGAAGTTGAAAAAGGCATCTGGAAAAT
TGGACAACGTCTTCCAAGCGAACGAGATTTAGCCGAGCGTTTTACAGTGAGTCGTATGACAGCCAGACAAGCTGTGACAG
CCTTAGTAGATGAGGGAATTCTCGACCGTCGAGTAGGTTCTGGAACCTACGTTGCTAGCCGACGTGTGCGTGAAAAAATG
CGTGGAACAACTTCTTTTACAGAAATTATCAGTTCGCAAGGCAAGGTTCCCTCAACAGAAGTTTTAAGTTATATTAGAAC
TGCTCCTAATGAAGTTGAATGTGAGAAGTTGAACATCACTAAAAAAGATTCGATTATTCGAATGGAGCGGATTCGATATG
CTGACAATGTTCCCATTTGTTATGAAGTGGCAAGTATTCCATTTAAATTAGTGAAATCTTTTGATAAAAAAGAAATTACT
AGTAATTTCTTTAAAACTTTGGAAAGCCATGGGCATGAAATTGGTCGGAGTGAACAAATTGTTTCGGCAAAGAGAGTCAG
TACAGAAGTATCAGAATACTTAAAAACAAGAGTTGGAGCTGCTATACTTGGTTTAACACAGGTTTCTTATCTAGTAGATG
GGACTGCTTTTGAATATGTTTTGTCACAATATGTTGGTGACCGTTTTGAATTTTATTTGGAAAGATAA

Upstream 100 bases:

>100_bases
TTATTTTAAATGTTCTTGATTTGTAAGTCAACTGAACTATGATATAATGGTAGACAGATATTAAAGTGGTATATATTGTT
ATTATTTAGTTAGGGGAACT

Downstream 100 bases:

>100_bases
AAAGGACTTAATGAAGTCCTTTTTTTACTTGCCGACGATATTGATACTGACGAAGTTGAAAATGAATCCAACAGCCCACA
CAAAAGCCACTTAAAGCGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MARKSVPNYVKIHDALKDEVEKGIWKIGQRLPSERDLAERFTVSRMTARQAVTALVDEGILDRRVGSGTYVASRRVREKM
RGTTSFTEIISSQGKVPSTEVLSYIRTAPNEVECEKLNITKKDSIIRMERIRYADNVPICYEVASIPFKLVKSFDKKEIT
SNFFKTLESHGHEIGRSEQIVSAKRVSTEVSEYLKTRVGAAILGLTQVSYLVDGTAFEYVLSQYVGDRFEFYLER

Sequences:

>Translated_235_residues
MARKSVPNYVKIHDALKDEVEKGIWKIGQRLPSERDLAERFTVSRMTARQAVTALVDEGILDRRVGSGTYVASRRVREKM
RGTTSFTEIISSQGKVPSTEVLSYIRTAPNEVECEKLNITKKDSIIRMERIRYADNVPICYEVASIPFKLVKSFDKKEIT
SNFFKTLESHGHEIGRSEQIVSAKRVSTEVSEYLKTRVGAAILGLTQVSYLVDGTAFEYVLSQYVGDRFEFYLER
>Mature_234_residues
ARKSVPNYVKIHDALKDEVEKGIWKIGQRLPSERDLAERFTVSRMTARQAVTALVDEGILDRRVGSGTYVASRRVREKMR
GTTSFTEIISSQGKVPSTEVLSYIRTAPNEVECEKLNITKKDSIIRMERIRYADNVPICYEVASIPFKLVKSFDKKEITS
NFFKTLESHGHEIGRSEQIVSAKRVSTEVSEYLKTRVGAAILGLTQVSYLVDGTAFEYVLSQYVGDRFEFYLER

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=31.5789473684211, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082252, Length=204, Percent_Identity=26.4705882352941, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=28.169014084507, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788418, Length=236, Percent_Identity=26.6949152542373, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26760; Mature: 26629

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKSVPNYVKIHDALKDEVEKGIWKIGQRLPSERDLAERFTVSRMTARQAVTALVDEGI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDRRVGSGTYVASRRVREKMRGTTSFTEIISSQGKVPSTEVLSYIRTAPNEVECEKLNIT
HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCC
KKDSIIRMERIRYADNVPICYEVASIPFKLVKSFDKKEITSNFFKTLESHGHEIGRSEQI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VSAKRVSTEVSEYLKTRVGAAILGLTQVSYLVDGTAFEYVLSQYVGDRFEFYLER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure 
ARKSVPNYVKIHDALKDEVEKGIWKIGQRLPSERDLAERFTVSRMTARQAVTALVDEGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDRRVGSGTYVASRRVREKMRGTTSFTEIISSQGKVPSTEVLSYIRTAPNEVECEKLNIT
HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCC
KKDSIIRMERIRYADNVPICYEVASIPFKLVKSFDKKEITSNFFKTLESHGHEIGRSEQI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VSAKRVSTEVSEYLKTRVGAAILGLTQVSYLVDGTAFEYVLSQYVGDRFEFYLER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]