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The map label for this gene is rmaC [H]

Identifier: 125623862

GI number: 125623862

Start: 992912

End: 993331

Strand: Direct

Name: rmaC [H]

Synonym: llmg_1027

Alternate gene names: 125623862

Gene position: 992912-993331 (Clockwise)

Preceding gene: 125623861

Following gene: 125623863

Centisome position: 39.25

GC content: 32.38

Gene sequence:

>420_bases
ATGAATCTTGAAAAAGTCAGCCAGTTACTTTACCAACTCAAAATTGTAAATCAAGAAATGACAGCAAAATTTGAAAAATC
AACTGGTTTTAGTATTACACGATATCAACTGATGATGATTTTAAAATGCAAAGGGAGATGTTCACAGACCCAACTGCAAA
ATGAATTGAAGATTGATAGTGCTGCGGTTACAAGACATTTGAAACTGCTTGAAGAAAAAAATCTTGTTAAACGTCAGCGA
AATAAAGACAATAATCGTGAAGTGTTTGTTGAAATTACTGACGAGGCCAAGGCTGATTTGGAGCGTTGTGCTAGAGAACA
TGATAATTCTGTTCATGAAAGTGAACAAACTTTAAATATTGGATTAAGTGATTCGGAAGAAGAAGAACTTTTAGAACTAT
TAACAAAATTAGTAAAATGA

Upstream 100 bases:

>100_bases
TAGTTTTTTTGTTGGCAAATTCTTTTATTTGTAATTTAATTATTTTAGTATTATAATTGACTAATCAATGATTGACTAAT
CAACAATGAAAGGAGAAAGA

Downstream 100 bases:

>100_bases
AAGAGGAAAAAATGAATAAAAACTTTAAAAATAATGATTTCACAGAAATTACCTTTGGTCGAAAATCAGTTAGACTTTAT
GATGAAAATTATAAGATTTC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNLEKVSQLLYQLKIVNQEMTAKFEKSTGFSITRYQLMMILKCKGRCSQTQLQNELKIDSAAVTRHLKLLEEKNLVKRQR
NKDNNREVFVEITDEAKADLERCAREHDNSVHESEQTLNIGLSDSEEEELLELLTKLVK

Sequences:

>Translated_139_residues
MNLEKVSQLLYQLKIVNQEMTAKFEKSTGFSITRYQLMMILKCKGRCSQTQLQNELKIDSAAVTRHLKLLEEKNLVKRQR
NKDNNREVFVEITDEAKADLERCAREHDNSVHESEQTLNIGLSDSEEEELLELLTKLVK
>Mature_139_residues
MNLEKVSQLLYQLKIVNQEMTAKFEKSTGFSITRYQLMMILKCKGRCSQTQLQNELKIDSAAVTRHLKLLEEKNLVKRQR
NKDNNREVFVEITDEAKADLERCAREHDNSVHESEQTLNIGLSDSEEEELLELLTKLVK

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16196; Mature: 16196

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEKVSQLLYQLKIVNQEMTAKFEKSTGFSITRYQLMMILKCKGRCSQTQLQNELKIDS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AAVTRHLKLLEEKNLVKRQRNKDNNREVFVEITDEAKADLERCAREHDNSVHESEQTLNI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHCCHHHEEC
GLSDSEEEELLELLTKLVK
CCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MNLEKVSQLLYQLKIVNQEMTAKFEKSTGFSITRYQLMMILKCKGRCSQTQLQNELKIDS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AAVTRHLKLLEEKNLVKRQRNKDNNREVFVEITDEAKADLERCAREHDNSVHESEQTLNI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHCCHHHEEC
GLSDSEEEELLELLTKLVK
CCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]