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The map label for this gene is kdgR [H]

Identifier: 125623702

GI number: 125623702

Start: 823766

End: 824446

Strand: Reverse

Name: kdgR [H]

Synonym: llmg_0857

Alternate gene names: 125623702

Gene position: 824446-823766 (Counterclockwise)

Preceding gene: 125623719

Following gene: 125623680

Centisome position: 32.59

GC content: 36.56

Gene sequence:

>681_bases
ATGAATGAATTGAATTTTAATCTACAGAATCAAGCCTATAAGCAAATTACAGGTAAAATTCTCCGGAATGAATATCGTCC
TGGACAAAAGATTTCACAAAAAAATATCGAAATTGATTTACAACTCGGTCGAACGCCTGTCAGAGAAGCACTTCTTCGTT
TACGCCGTGATGGACTCATTTATAGCATTCCTCAATCAGGAACTTACGTCACAAAAATTGATTTAGATGCAGCAATTAAT
GCTCGATTCATTCGAGAAAACCTTGAAGCTAAAATAGTTGCTGAGGCAGCTTCTTTAAATAATAGTCTTTTGCTAAATCA
AGCACGCGATGCCATTGAACTTCAAGAAAAATATGCTGCCAATGCTGAATATCACAATTTTTTTAATGCTGATGAGGAAT
TTCATAAAACCTTTTATTTGATGACCAATCACGCTCAGGTTTGGGACTGGCTTCAAACCATTAATATTCAATTCAACCGA
TTCCGTTGGCTGCGTCTTGCGATTTCTGATTTACCATGGAATACCTTGATTGAACAACACAAGGAAATTCTAAAGGCCGT
CGAAAATCACGATGGAGAAAAAGCCGTTGCTGCTGCTGCCAAGCACTTACACTTAATGTTTGATGAAGAAATGGCAGTTT
TAAAAGCTTTCCCAGAATACTTTGATAATTTACCAGAATAA

Upstream 100 bases:

>100_bases
AAAAGGAAATTTATTGACCTTGTTTCACTCGGTCAGAATTAAAAAAAGGCTCACAGCTTGAAACCTTGTTTCGACCTACT
GGCTGTGCTATAATTACAGA

Downstream 100 bases:

>100_bases
AAAAACTCTGCCGGAATTCCGTGAGAGTTTTTTGATGAGTAATAAATTAATATTTATTCAAGGTTTATTTTACAGTCTTT
AGAATCTGGAATCAAAAACG

Product: GntR family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNELNFNLQNQAYKQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTYVTKIDLDAAIN
ARFIRENLEAKIVAEAASLNNSLLLNQARDAIELQEKYAANAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNR
FRWLRLAISDLPWNTLIEQHKEILKAVENHDGEKAVAAAAKHLHLMFDEEMAVLKAFPEYFDNLPE

Sequences:

>Translated_226_residues
MNELNFNLQNQAYKQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTYVTKIDLDAAIN
ARFIRENLEAKIVAEAASLNNSLLLNQARDAIELQEKYAANAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNR
FRWLRLAISDLPWNTLIEQHKEILKAVENHDGEKAVAAAAKHLHLMFDEEMAVLKAFPEYFDNLPE
>Mature_226_residues
MNELNFNLQNQAYKQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTYVTKIDLDAAIN
ARFIRENLEAKIVAEAASLNNSLLLNQARDAIELQEKYAANAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNR
FRWLRLAISDLPWNTLIEQHKEILKAVENHDGEKAVAAAAKHLHLMFDEEMAVLKAFPEYFDNLPE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=195, Percent_Identity=28.2051282051282, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26371; Mature: 26371

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELNFNLQNQAYKQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHCCCE
YSIPQSGTYVTKIDLDAAINARFIRENLEAKIVAEAASLNNSLLLNQARDAIELQEKYAA
EECCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
NAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNRFRWLRLAISDLPWNTLIEQH
CCHHHHCCCCCHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHEEHHHHHCCHHHHHHHH
KEILKAVENHDGEKAVAAAAKHLHLMFDEEMAVLKAFPEYFDNLPE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNELNFNLQNQAYKQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHCCCE
YSIPQSGTYVTKIDLDAAINARFIRENLEAKIVAEAASLNNSLLLNQARDAIELQEKYAA
EECCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
NAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNRFRWLRLAISDLPWNTLIEQH
CCHHHHCCCCCHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHEEHHHHHCCHHHHHHHH
KEILKAVENHDGEKAVAAAAKHLHLMFDEEMAVLKAFPEYFDNLPE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]