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The map label for this gene is tnpR [H]

Identifier: 125623567

GI number: 125623567

Start: 696901

End: 697455

Strand: Direct

Name: tnpR [H]

Synonym: llmg_0711

Alternate gene names: 125623567

Gene position: 696901-697455 (Clockwise)

Preceding gene: 125623566

Following gene: 125623571

Centisome position: 27.55

GC content: 36.58

Gene sequence:

>555_bases
ATGAATATAGGATACGCACGAGTTTCAACTGGACTTCAAAATTTAGATTTACAAAAAGATAGTCTCAAAAAATATAACTG
TGAAAAAATATTTACTGACCATATGTCAGGAAGTAAAAGAGAAAGACCTGGATTAAAATCCGCCATCGAATTTTCTCGTC
CTGGGGATACGATTGTTGTTTGGCGATTGGATCGACTAGGTAGAAATATGGAAGATCTCATTAATATTGTTAATTCTCTT
AATAATAAAGGGGTAAGTTTTCATAGTCTACAAGAAAATATTACAATGGATAAATCAAGTTCGACTGGACAATTGATGTT
TCATTTGTTTGCGGCTTTTGCGGAATTTGAGCGAAATCTTATTTTGGAGCGTTCTGCCGCTGGTAGAGAAGCCGCACGTG
CAAGAGGACGACTTGGAGGAAGACCTGAGAAATTTTCGGAGCAAGACGTAAAGCTTCTTAAAACCTTGGTAGAAAGTGGT
ACGCCGATTAAGTCGATTGCGGATTCTTGGGGAGTTTCAAGAACCACAATTTATAGATATATTAATAAGTTTTAG

Upstream 100 bases:

>100_bases
CATTTATATTTATTGTTCATAAACCCGTGATTTATTCTATGTTCATTTATACATATCTTTCTAAGTTATGATACAATAAA
TTAAAATGAAGGAGAAAAAA

Downstream 100 bases:

>100_bases
AATAAAATAAAAGACCAGCTCACAACGATTAAGTTGTGACCTGATTTGCTCTTTTAATTATGGTTCTATGATATTTGGTG
TTTAAGTATAAGAATAGTGT

Product: DNA-invertase/resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNIGYARVSTGLQNLDLQKDSLKKYNCEKIFTDHMSGSKRERPGLKSAIEFSRPGDTIVVWRLDRLGRNMEDLINIVNSL
NNKGVSFHSLQENITMDKSSSTGQLMFHLFAAFAEFERNLILERSAAGREAARARGRLGGRPEKFSEQDVKLLKTLVESG
TPIKSIADSWGVSRTTIYRYINKF

Sequences:

>Translated_184_residues
MNIGYARVSTGLQNLDLQKDSLKKYNCEKIFTDHMSGSKRERPGLKSAIEFSRPGDTIVVWRLDRLGRNMEDLINIVNSL
NNKGVSFHSLQENITMDKSSSTGQLMFHLFAAFAEFERNLILERSAAGREAARARGRLGGRPEKFSEQDVKLLKTLVESG
TPIKSIADSWGVSRTTIYRYINKF
>Mature_184_residues
MNIGYARVSTGLQNLDLQKDSLKKYNCEKIFTDHMSGSKRERPGLKSAIEFSRPGDTIVVWRLDRLGRNMEDLINIVNSL
NNKGVSFHSLQENITMDKSSSTGQLMFHLFAAFAEFERNLILERSAAGREAARARGRLGGRPEKFSEQDVKLLKTLVESG
TPIKSIADSWGVSRTTIYRYINKF

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=179, Percent_Identity=46.3687150837989, Blast_Score=165, Evalue=2e-42,
Organism=Escherichia coli, GI1787638, Length=187, Percent_Identity=34.7593582887701, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787827, Length=187, Percent_Identity=34.7593582887701, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20819; Mature: 20819

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGYARVSTGLQNLDLQKDSLKKYNCEKIFTDHMSGSKRERPGLKSAIEFSRPGDTIVV
CCCCHHHHHHCHHHCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEE
WRLDRLGRNMEDLINIVNSLNNKGVSFHSLQENITMDKSSSTGQLMFHLFAAFAEFERNL
EEHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILERSAAGREAARARGRLGGRPEKFSEQDVKLLKTLVESGTPIKSIADSWGVSRTTIYRY
HHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
INKF
HHCC
>Mature Secondary Structure
MNIGYARVSTGLQNLDLQKDSLKKYNCEKIFTDHMSGSKRERPGLKSAIEFSRPGDTIVV
CCCCHHHHHHCHHHCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEE
WRLDRLGRNMEDLINIVNSLNNKGVSFHSLQENITMDKSSSTGQLMFHLFAAFAEFERNL
EEHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILERSAAGREAARARGRLGGRPEKFSEQDVKLLKTLVESGTPIKSIADSWGVSRTTIYRY
HHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
INKF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]