Click here to switch to the map view.

The map label for this gene is flpB [H]

Identifier: 125623550

GI number: 125623550

Start: 682176

End: 682865

Strand: Direct

Name: flpB [H]

Synonym: llmg_0694

Alternate gene names: 125623550

Gene position: 682176-682865 (Clockwise)

Preceding gene: 125623549

Following gene: 125623551

Centisome position: 26.97

GC content: 37.54

Gene sequence:

>690_bases
ATGAGTAAGTATAAACATCATTTTAGTCATCATGAACACCACTGTGTACAGCTCGTGCCACTATTTGGTTTACTTTCAGA
AAGTGAATTAGTGCAAGTTGAGCAGGTTGTTAATCATAAAATTTTTGAAAAAGGTGAAACAGTCATCAGCCCCTTTGCAG
TGCCTCAACTTGCAATTGTGGCGCATGGCACCTTGAAAATATACCAGCTTTCTAGTGCTGGTAAAGAGCAGTTACTACGT
GTGATTGAACCTGGTGGATACGCAGGTGAAGACGCCTTGTTTGGAGTAATGAATGATAATCTCTATGGTGAAACATTGGA
AGAAACGCAAATTTGCTTTTTGCGACAACAAGATTTCAAAAATTTGTTGTTAAAATATCCCGAGCTCAGTTTGAAATTGC
TTGAAACCACCGTGAGAAGAGCTGCGGAAATGCAATATCAAGCACAATTTCTCATGATGGAAGATGTTGAAAGTCGAATC
GCTAATTATCTTTTGCAACTCGTCAAAGTAGTAGATTCAAATTCTGTTATGATTCCAATGAAAATGAAAGATCTTGCAAC
GTTCATCGGAACAACTCCCGAAACTATTTCTCGTAAGTTCAAAATACTCGAAGAAAAAGGATTCATTGAGCGCCGAGGAA
AGATAATCAAAATACTAGATATTGATAGCCTTGAAGATGATTACGCTTAA

Upstream 100 bases:

>100_bases
GATAATGATAATTAGTTTTTACGAAACTGTAGGCTTTAGTTGAATGAGGCTTGCAGTTTGATAATTTTAGCGCGATAATA
AGATAAGGAGAATCCCCAAA

Downstream 100 bases:

>100_bases
AATGGTCTAAAGAGCCAATAGAAAAAGGACATAACTTTTCCTAAATTTTCAAAACGTCGAAAAGTCATTGAACGCGTATT
CTCTTTTCTGACAAACCTCG

Product: transcriptional regulator FNR like protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSKYKHHFSHHEHHCVQLVPLFGLLSESELVQVEQVVNHKIFEKGETVISPFAVPQLAIVAHGTLKIYQLSSAGKEQLLR
VIEPGGYAGEDALFGVMNDNLYGETLEETQICFLRQQDFKNLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRI
ANYLLQLVKVVDSNSVMIPMKMKDLATFIGTTPETISRKFKILEEKGFIERRGKIIKILDIDSLEDDYA

Sequences:

>Translated_229_residues
MSKYKHHFSHHEHHCVQLVPLFGLLSESELVQVEQVVNHKIFEKGETVISPFAVPQLAIVAHGTLKIYQLSSAGKEQLLR
VIEPGGYAGEDALFGVMNDNLYGETLEETQICFLRQQDFKNLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRI
ANYLLQLVKVVDSNSVMIPMKMKDLATFIGTTPETISRKFKILEEKGFIERRGKIIKILDIDSLEDDYA
>Mature_228_residues
SKYKHHFSHHEHHCVQLVPLFGLLSESELVQVEQVVNHKIFEKGETVISPFAVPQLAIVAHGTLKIYQLSSAGKEQLLRV
IEPGGYAGEDALFGVMNDNLYGETLEETQICFLRQQDFKNLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRIA
NYLLQLVKVVDSNSVMIPMKMKDLATFIGTTPETISRKFKILEEKGFIERRGKIIKILDIDSLEDDYA

Specific function: Global Transcription Factor That Controls The Expression Of Over 100 Target Genes In Response To Anoxia. It Facilitates The Adaptation To Anaerobic Growth Conditions By Regulating The Expression Of Gene Products That Are Involved In Anaerobic Energy Metab

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 26204; Mature: 26073

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYKHHFSHHEHHCVQLVPLFGLLSESELVQVEQVVNHKIFEKGETVISPFAVPQLAIV
CCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEE
AHGTLKIYQLSSAGKEQLLRVIEPGGYAGEDALFGVMNDNLYGETLEETQICFLRQQDFK
ECCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
NLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRIANYLLQLVKVVDSNSVMIPM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
KMKDLATFIGTTPETISRKFKILEEKGFIERRGKIIKILDIDSLEDDYA
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SKYKHHFSHHEHHCVQLVPLFGLLSESELVQVEQVVNHKIFEKGETVISPFAVPQLAIV
CCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEE
AHGTLKIYQLSSAGKEQLLRVIEPGGYAGEDALFGVMNDNLYGETLEETQICFLRQQDFK
ECCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
NLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRIANYLLQLVKVVDSNSVMIPM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
KMKDLATFIGTTPETISRKFKILEEKGFIERRGKIIKILDIDSLEDDYA
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2113923; 8441692 [H]