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The map label for this gene is insF1 [C]

Identifier: 125623514

GI number: 125623514

Start: 648490

End: 649110

Strand: Reverse

Name: insF1 [C]

Synonym: llmg_0654

Alternate gene names: 125623514

Gene position: 649110-648490 (Counterclockwise)

Preceding gene: 125623515

Following gene: 125623513

Centisome position: 25.66

GC content: 34.62

Gene sequence:

>621_bases
ATGAAAGCCAAGAAAAGAATTGGCACAAAAGCTTTTAAAATTATACTTTTGCGCGATTATGGCATCAATATCTCTGAAGG
TCGAATTTTTCGACTTCTAAAATCAATGAATCTCCCCAAAATGTCAACGACTAAGCCTCGTTTCAAATCAAGAAAACCAC
CTGTGTTTTCTTCTGAAAACTTGCTTAAACAAGAATTTAATCCTAATCTTCCTAATCAAGTTTGGACTACTGATTTCACT
TATATTTCTATTGGAAACAAACGTCATGTTTACCTCTGCGCTATTCTTGACCTCTACTCTAGAAAATGTATCGCTTGGAA
AGTGAGTGATAAAATTGATGCCAAATTAGCCTGTGATACCTTAGAAACAGCTATAAATAAGAGGAAGCCTAAGGAACCAA
TTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCT
TCTTACTCCAAGCCTGGATATCCTTATGATAATGCCGTCACAGAGGTCTTTTTCAAGTACCTTAAACAACGTGAAATCAA
TAGGAAAACTTTTCATTCCATTGAAGAAGTAAGATCATCTTGCTTTGAGTATATTGAATGA

Upstream 100 bases:

>100_bases
ACGTGTCAATCGGTCAACCTACTATAATTTCATTAACGAGAAACCCTCTAAGCGAGATATAGAGAATCAACGCTTTAGAA
AACTACTTCTTGAAATCTAT

Downstream 100 bases:

>100_bases
TTTTATAATAACTATAATCCGCATTCTGCCAATAATGGATTAACACCAAATCAGAAAGAACTAGAATATTTTAAAAATTG
GAAAGGTTATAATAAACTAG

Product: transposase for insertion sequence element IS-LL6B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKAKKRIGTKAFKIILLRDYGINISEGRIFRLLKSMNLPKMSTTKPRFKSRKPPVFSSENLLKQEFNPNLPNQVWTTDFT
YISIGNKRHVYLCAILDLYSRKCIAWKVSDKIDAKLACDTLETAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLA
SYSKPGYPYDNAVTEVFFKYLKQREINRKTFHSIEEVRSSCFEYIE

Sequences:

>Translated_206_residues
MKAKKRIGTKAFKIILLRDYGINISEGRIFRLLKSMNLPKMSTTKPRFKSRKPPVFSSENLLKQEFNPNLPNQVWTTDFT
YISIGNKRHVYLCAILDLYSRKCIAWKVSDKIDAKLACDTLETAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLA
SYSKPGYPYDNAVTEVFFKYLKQREINRKTFHSIEEVRSSCFEYIE
>Mature_206_residues
MKAKKRIGTKAFKIILLRDYGINISEGRIFRLLKSMNLPKMSTTKPRFKSRKPPVFSSENLLKQEFNPNLPNQVWTTDFT
YISIGNKRHVYLCAILDLYSRKCIAWKVSDKIDAKLACDTLETAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLA
SYSKPGYPYDNAVTEVFFKYLKQREINRKTFHSIEEVRSSCFEYIE

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=161, Percent_Identity=31.6770186335404, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI1788405, Length=159, Percent_Identity=40.8805031446541, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787263, Length=159, Percent_Identity=40.8805031446541, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786753, Length=159, Percent_Identity=40.8805031446541, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786570, Length=159, Percent_Identity=40.8805031446541, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786490, Length=159, Percent_Identity=40.8805031446541, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789981, Length=204, Percent_Identity=30.8823529411765, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 24114; Mature: 24114

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKKRIGTKAFKIILLRDYGINISEGRIFRLLKSMNLPKMSTTKPRFKSRKPPVFSSEN
CCCHHHHCHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
LLKQEFNPNLPNQVWTTDFTYISIGNKRHVYLCAILDLYSRKCIAWKVSDKIDAKLACDT
HHHHHCCCCCCCCEEECCEEEEEECCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LETAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLASYSKPGYPYDNAVTEVFFKY
HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LKQREINRKTFHSIEEVRSSCFEYIE
HHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAKKRIGTKAFKIILLRDYGINISEGRIFRLLKSMNLPKMSTTKPRFKSRKPPVFSSEN
CCCHHHHCHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
LLKQEFNPNLPNQVWTTDFTYISIGNKRHVYLCAILDLYSRKCIAWKVSDKIDAKLACDT
HHHHHCCCCCCCCEEECCEEEEEECCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LETAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLASYSKPGYPYDNAVTEVFFKY
HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LKQREINRKTFHSIEEVRSSCFEYIE
HHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387149 [H]