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The map label for this gene is rbsR [H]

Identifier: 125623351

GI number: 125623351

Start: 478340

End: 479329

Strand: Direct

Name: rbsR [H]

Synonym: llmg_0484

Alternate gene names: 125623351

Gene position: 478340-479329 (Clockwise)

Preceding gene: 125623350

Following gene: 125623352

Centisome position: 18.91

GC content: 34.65

Gene sequence:

>990_bases
ATGAAAAAAGTAACAATTAAGGATGTTGCACTACAAACTGGTTTATCAGTGAGCACAATTTCTAGAGTATTTAACAATTA
TGGTGATATCAGTGATAAAACAATTAAAAAAGTTACTCTTGCGGCTAAGGAATTGGGCTATACTCCAAACAGTGCAGCAA
AACAACTCTCAAGTAAGAAGAAAAAAATTATTGCTTTAATTTTGAATGAAATTAATGTTACCCCTGGAGTTGCTATGCCG
TTGGAAGTCTTAGGTGGTGTGGTCGATAATTTGGATAAGACAGATTATGAATTTGTTTTTTATGCCACCAATTCTACTAA
ACAAAAGCAAAAAAGTTTGAAGCAATTTTGCAATGAACGTGATATTACGGGTTTAATTATTCAGGGATTACGTATTTCTG
ACCCATATTATCAGGAACTGGCAACTTTTGATTTACCCACTGTTGCGATTGATTTAGATATTGAAAATGATAAGGTTGGA
ACGGTCTCAACTGATAATGTTAAGGCTGCCTTTGAAATGACTCGTTTGTTGATAAATTTAGGTCATAAGAACATTATTTT
TATCAATGGAACTAAAATGGCCACCGTTGCACAAGCACGTGAGTCTGGCTATCTTGCGGCAACTGAGCATTCACAAATTT
TTTATGCAAATTTTTCTGAAAATGAAGCTTATCAGTGGGCGATTGATTATGCTAAAAATAAAGGATTTAAAAAAGAGGAT
GCTATCTTTGCGGCTTCTGATATTATGGCAATTGGGATTATTAAGGCTTTTAGAACTCTAAATTTAGTCAATAAAGTTGC
AGTGGCTGGTTTTGACGACATTACACTTGCTAGTTATATCACACCTTCTTTAACGACAGTTCGACAAGATATTAGGAAAA
TCTCAGAGTATGCGGTGAGGAACCTAATTTGCCAAATCGAGACTGGAGAAGTCAAGCATCGTTTTATACCTTTTCAGATA
ATTGAGCGTGAAAGTACGAGTATGAGTTAA

Upstream 100 bases:

>100_bases
AGTTTATAAATAAAATGGTTCTATCAAGGGCCTTTTTATTTATAGTTGTTTAGAAATAGGAAAAGTGGTAATATTAAAAA
AAATGAGCAAGAGGGATGTG

Downstream 100 bases:

>100_bases
TTTAAGAAACTCATATTTTCTTATTGACAAATGAAAGCGATTACTATATAATGTTTTTTTGTAAACCTAAAACGTTTTAG
CTGGAGGGAGAAAATGAGAG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKKVTIKDVALQTGLSVSTISRVFNNYGDISDKTIKKVTLAAKELGYTPNSAAKQLSSKKKKIIALILNEINVTPGVAMP
LEVLGGVVDNLDKTDYEFVFYATNSTKQKQKSLKQFCNERDITGLIIQGLRISDPYYQELATFDLPTVAIDLDIENDKVG
TVSTDNVKAAFEMTRLLINLGHKNIIFINGTKMATVAQARESGYLAATEHSQIFYANFSENEAYQWAIDYAKNKGFKKED
AIFAASDIMAIGIIKAFRTLNLVNKVAVAGFDDITLASYITPSLTTVRQDIRKISEYAVRNLICQIETGEVKHRFIPFQI
IERESTSMS

Sequences:

>Translated_329_residues
MKKVTIKDVALQTGLSVSTISRVFNNYGDISDKTIKKVTLAAKELGYTPNSAAKQLSSKKKKIIALILNEINVTPGVAMP
LEVLGGVVDNLDKTDYEFVFYATNSTKQKQKSLKQFCNERDITGLIIQGLRISDPYYQELATFDLPTVAIDLDIENDKVG
TVSTDNVKAAFEMTRLLINLGHKNIIFINGTKMATVAQARESGYLAATEHSQIFYANFSENEAYQWAIDYAKNKGFKKED
AIFAASDIMAIGIIKAFRTLNLVNKVAVAGFDDITLASYITPSLTTVRQDIRKISEYAVRNLICQIETGEVKHRFIPFQI
IERESTSMS
>Mature_329_residues
MKKVTIKDVALQTGLSVSTISRVFNNYGDISDKTIKKVTLAAKELGYTPNSAAKQLSSKKKKIIALILNEINVTPGVAMP
LEVLGGVVDNLDKTDYEFVFYATNSTKQKQKSLKQFCNERDITGLIIQGLRISDPYYQELATFDLPTVAIDLDIENDKVG
TVSTDNVKAAFEMTRLLINLGHKNIIFINGTKMATVAQARESGYLAATEHSQIFYANFSENEAYQWAIDYAKNKGFKKED
AIFAASDIMAIGIIKAFRTLNLVNKVAVAGFDDITLASYITPSLTTVRQDIRKISEYAVRNLICQIETGEVKHRFIPFQI
IERESTSMS

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=315, Percent_Identity=27.9365079365079, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786540, Length=346, Percent_Identity=25.7225433526012, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1788474, Length=348, Percent_Identity=27.5862068965517, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790369, Length=340, Percent_Identity=25.8823529411765, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787948, Length=341, Percent_Identity=24.9266862170088, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789068, Length=315, Percent_Identity=24.4444444444444, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787580, Length=295, Percent_Identity=24.7457627118644, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787906, Length=212, Percent_Identity=30.188679245283, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1789202, Length=300, Percent_Identity=25, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994940, Length=328, Percent_Identity=22.2560975609756, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789456, Length=297, Percent_Identity=24.9158249158249, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790689, Length=322, Percent_Identity=21.7391304347826, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786268, Length=308, Percent_Identity=20.7792207792208, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790715, Length=340, Percent_Identity=20.8823529411765, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36594; Mature: 36594

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00894 HTH_DEOR_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVTIKDVALQTGLSVSTISRVFNNYGDISDKTIKKVTLAAKELGYTPNSAAKQLSSKK
CCCEEHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KKIIALILNEINVTPGVAMPLEVLGGVVDNLDKTDYEFVFYATNSTKQKQKSLKQFCNER
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
DITGLIIQGLRISDPYYQELATFDLPTVAIDLDIENDKVGTVSTDNVKAAFEMTRLLINL
CCCEEEEECEECCCHHHHHHHHCCCCEEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHC
GHKNIIFINGTKMATVAQARESGYLAATEHSQIFYANFSENEAYQWAIDYAKNKGFKKED
CCCEEEEECCCCHHHHHHHHHCCCEEEECCCEEEEEECCCCCCEEEEEEHHHCCCCCCCC
AIFAASDIMAIGIIKAFRTLNLVNKVAVAGFDDITLASYITPSLTTVRQDIRKISEYAVR
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
NLICQIETGEVKHRFIPFQIIERESTSMS
HHEEEEECCCCEEEECCEEEEECCCCCCC
>Mature Secondary Structure
MKKVTIKDVALQTGLSVSTISRVFNNYGDISDKTIKKVTLAAKELGYTPNSAAKQLSSKK
CCCEEHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KKIIALILNEINVTPGVAMPLEVLGGVVDNLDKTDYEFVFYATNSTKQKQKSLKQFCNER
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
DITGLIIQGLRISDPYYQELATFDLPTVAIDLDIENDKVGTVSTDNVKAAFEMTRLLINL
CCCEEEEECEECCCHHHHHHHHCCCCEEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHC
GHKNIIFINGTKMATVAQARESGYLAATEHSQIFYANFSENEAYQWAIDYAKNKGFKKED
CCCEEEEECCCCHHHHHHHHHCCCEEEECCCEEEEEECCCCCCEEEEEEHHHCCCCCCCC
AIFAASDIMAIGIIKAFRTLNLVNKVAVAGFDDITLASYITPSLTTVRQDIRKISEYAVR
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
NLICQIETGEVKHRFIPFQIIERESTSMS
HHEEEEECCCCEEEECCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]