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The map label for this gene is dppA [H]

Identifier: 125623232

GI number: 125623232

Start: 350418

End: 352070

Strand: Direct

Name: dppA [H]

Synonym: llmg_0362

Alternate gene names: 125623232

Gene position: 350418-352070 (Clockwise)

Preceding gene: 125623231

Following gene: 125623233

Centisome position: 13.85

GC content: 37.45

Gene sequence:

>1653_bases
ATGAAACAAGCAAAAATTATTGGGCTTAGCACCGTCATTGCTCTGTCAGGAATTATTTTAGTGGCCTGTGGTTCAAAAAC
AAGTGAGCAAAAAAACATTCAATTTTCAATTCCCACTGATGTGGCCTCGCTGGATACCACAATTTTAACTGACCAGTATT
CTTATGATGTTGCAGGAAATGTTGAAGAAGGATTGACACGCGTTGACTCTAAAGGAAATGCTGCCTTGGCTCTTGCAAAA
TCAATTGATGTTTCAAAAGATGGTTTGACTTATACGGTCACCCTTAAAGATAATTTAAAATGGTCAAATGGTGATAAGTT
GACCGCTAAAGATTTTGTTTATTCATGGAAAAGAGCAGTAGACCCTAAAACAGGTTCAGAATATGCCTATTTGATGGGAG
CAGTTTCTGGAGCTAATGATATTATTTCTGGTAAATCATCACTTGATACTTTAGGAATTAAAGCCGAGTCAGATACAGAA
TTTACAGTCACCTTAGCACAACCAACACCATATTTTAAATTCCTTTTGTCAGAACCCGTTTATTATCCACTTGATCAAAA
AGTCGTTGATAAATATGGTAAACAATATGGGACATCCTCAGATAAAACCGTCTATAATGGCCCATTCATGTTCAAATCAG
ATAAAGCTTGGACTGGAACAAATAAGAATTTTTCAATTTATGCCAATCCAAATTATTATGATAAATCAGCAGTTAAGTCT
AAACAAATTGATTTTCAAGTCATTTCAAATGCTAATACAGGAGCTCAACTCTATAAACAAGGAAAACTCGACTTTACACT
CCTTTCAACAACTGATTTGATTAATGCCAATAAAAAAACAGAGGGTTATACAGTCTTTAAACAAGCACGGACAGACTATA
TTGAATACAATCAGTCTGGAAAAAATGCCTCAAGTCCTGATGCTCAAAAAGCTTTAGCAAATCAAGACATCCGTCAAGCT
TTAAACTTAGCAACAAATCGAGCAGAGGTTGTCAAAACAGCCCTCCCTGGCTCGACCGCTGCGACAAGTTTCACACCAGT
GGGGATGAGTAAGACCTCAACGGGAGAAGATTTTGCAACTTATGCCAAACAAGATTATAGTTATGACCCGACAAAAGCAA
AGGAACTTTGGGCAAAAGGCTTAAAAGAACTTGGTTTGACCAAACTCAGTCTTAGCCTTGAAGCTGCTGGAGATTTGGCA
CCATCAGAAGCAACGGCTAACTTCTTGCAAACGGCTTATCAACAAAATCTGCCGGGTTTGACGGTTAATTTAAAACTCGT
TCCATTCAAACAAAGACTGAATGATGCGCAAAATGGAAATTTTGACATGGTACTCTCAGGTTGGGGTGGAGATTATGCTG
AACCCTCTACCTTCTTGCAACTCTTTACAACAGGTCAATCCTATAATGACGGAAAATTCTCAAGTAAAACCTATGATGAT
GCTTTTAAAGCAGCAACAACAACACCAGATGTTCTTGAGCCAGCCAAAGTAGACGAACATTATAAAGCGGCAGAAGCAGC
TCTTTATGAAGGATCATATATCAATCCAATTGATTTTCAAGCCAATCCAGCTTTAATGAATCCTAAAATCACAGGCTTAG
AATTTCATTCAACAGGTCTAGCTTACGACTTAAAATCGGCTTATATTAAATAA

Upstream 100 bases:

>100_bases
ATTCTTGACATTAGATTTTCGAAGAAGTATAATAGGTCCACGTTTAATTTTCAGAATAATTAGAAAATTCGATAGTACTT
TTAGGATTTGGAGAAACCAG

Downstream 100 bases:

>100_bases
TTAAAACATAAAGATAAATTTTCTGAAAATTTATCTTTTTTATTGAATATTCTTACTGGTTGAAATAGAATACAAACTAT
TCAGAGCCTAGCTAGATGAA

Product: dipeptide-binding protein precursor

Products: NA

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MKQAKIIGLSTVIALSGIILVACGSKTSEQKNIQFSIPTDVASLDTTILTDQYSYDVAGNVEEGLTRVDSKGNAALALAK
SIDVSKDGLTYTVTLKDNLKWSNGDKLTAKDFVYSWKRAVDPKTGSEYAYLMGAVSGANDIISGKSSLDTLGIKAESDTE
FTVTLAQPTPYFKFLLSEPVYYPLDQKVVDKYGKQYGTSSDKTVYNGPFMFKSDKAWTGTNKNFSIYANPNYYDKSAVKS
KQIDFQVISNANTGAQLYKQGKLDFTLLSTTDLINANKKTEGYTVFKQARTDYIEYNQSGKNASSPDAQKALANQDIRQA
LNLATNRAEVVKTALPGSTAATSFTPVGMSKTSTGEDFATYAKQDYSYDPTKAKELWAKGLKELGLTKLSLSLEAAGDLA
PSEATANFLQTAYQQNLPGLTVNLKLVPFKQRLNDAQNGNFDMVLSGWGGDYAEPSTFLQLFTTGQSYNDGKFSSKTYDD
AFKAATTTPDVLEPAKVDEHYKAAEAALYEGSYINPIDFQANPALMNPKITGLEFHSTGLAYDLKSAYIK

Sequences:

>Translated_550_residues
MKQAKIIGLSTVIALSGIILVACGSKTSEQKNIQFSIPTDVASLDTTILTDQYSYDVAGNVEEGLTRVDSKGNAALALAK
SIDVSKDGLTYTVTLKDNLKWSNGDKLTAKDFVYSWKRAVDPKTGSEYAYLMGAVSGANDIISGKSSLDTLGIKAESDTE
FTVTLAQPTPYFKFLLSEPVYYPLDQKVVDKYGKQYGTSSDKTVYNGPFMFKSDKAWTGTNKNFSIYANPNYYDKSAVKS
KQIDFQVISNANTGAQLYKQGKLDFTLLSTTDLINANKKTEGYTVFKQARTDYIEYNQSGKNASSPDAQKALANQDIRQA
LNLATNRAEVVKTALPGSTAATSFTPVGMSKTSTGEDFATYAKQDYSYDPTKAKELWAKGLKELGLTKLSLSLEAAGDLA
PSEATANFLQTAYQQNLPGLTVNLKLVPFKQRLNDAQNGNFDMVLSGWGGDYAEPSTFLQLFTTGQSYNDGKFSSKTYDD
AFKAATTTPDVLEPAKVDEHYKAAEAALYEGSYINPIDFQANPALMNPKITGLEFHSTGLAYDLKSAYIK
>Mature_550_residues
MKQAKIIGLSTVIALSGIILVACGSKTSEQKNIQFSIPTDVASLDTTILTDQYSYDVAGNVEEGLTRVDSKGNAALALAK
SIDVSKDGLTYTVTLKDNLKWSNGDKLTAKDFVYSWKRAVDPKTGSEYAYLMGAVSGANDIISGKSSLDTLGIKAESDTE
FTVTLAQPTPYFKFLLSEPVYYPLDQKVVDKYGKQYGTSSDKTVYNGPFMFKSDKAWTGTNKNFSIYANPNYYDKSAVKS
KQIDFQVISNANTGAQLYKQGKLDFTLLSTTDLINANKKTEGYTVFKQARTDYIEYNQSGKNASSPDAQKALANQDIRQA
LNLATNRAEVVKTALPGSTAATSFTPVGMSKTSTGEDFATYAKQDYSYDPTKAKELWAKGLKELGLTKLSLSLEAAGDLA
PSEATANFLQTAYQQNLPGLTVNLKLVPFKQRLNDAQNGNFDMVLSGWGGDYAEPSTFLQLFTTGQSYNDGKFSSKTYDD
AFKAATTTPDVLEPAKVDEHYKAAEAALYEGSYINPIDFQANPALMNPKITGLEFHSTGLAYDLKSAYIK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=540, Percent_Identity=27.4074074074074, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=28.6792452830189, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI87081878, Length=535, Percent_Identity=28.9719626168224, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1787052, Length=562, Percent_Identity=24.9110320284698, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1789887, Length=459, Percent_Identity=25.4901960784314, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789966, Length=462, Percent_Identity=25.974025974026, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=23.3918128654971, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59910; Mature: 59910

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAKIIGLSTVIALSGIILVACGSKTSEQKNIQFSIPTDVASLDTTILTDQYSYDVAGN
CCCCEEEHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCHHCCEEEEECCCCCCCCCC
VEEGLTRVDSKGNAALALAKSIDVSKDGLTYTVTLKDNLKWSNGDKLTAKDFVYSWKRAV
HHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHHC
DPKTGSEYAYLMGAVSGANDIISGKSSLDTLGIKAESDTEFTVTLAQPTPYFKFLLSEPV
CCCCCCCEEEEEEECCCCCHHHCCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHCCCC
YYPLDQKVVDKYGKQYGTSSDKTVYNGPFMFKSDKAWTGTNKNFSIYANPNYYDKSAVKS
CCCCCHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCCCCHHHHHC
KQIDFQVISNANTGAQLYKQGKLDFTLLSTTDLINANKKTEGYTVFKQARTDYIEYNQSG
CCCEEEEECCCCCCHHHHHCCCCEEEEEECHHHHCCCCCCCCEEHHHHHCCHHEEECCCC
KNASSPDAQKALANQDIRQALNLATNRAEVVKTALPGSTAATSFTPVGMSKTSTGEDFAT
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
YAKQDYSYDPTKAKELWAKGLKELGLTKLSLSLEAAGDLAPSEATANFLQTAYQQNLPGL
HHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
TVNLKLVPFKQRLNDAQNGNFDMVLSGWGGDYAEPSTFLQLFTTGQSYNDGKFSSKTYDD
EEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHH
AFKAATTTPDVLEPAKVDEHYKAAEAALYEGSYINPIDFQANPALMNPKITGLEFHSTGL
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEECCCC
AYDLKSAYIK
EEEHHHHHCC
>Mature Secondary Structure
MKQAKIIGLSTVIALSGIILVACGSKTSEQKNIQFSIPTDVASLDTTILTDQYSYDVAGN
CCCCEEEHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCHHCCEEEEECCCCCCCCCC
VEEGLTRVDSKGNAALALAKSIDVSKDGLTYTVTLKDNLKWSNGDKLTAKDFVYSWKRAV
HHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHHC
DPKTGSEYAYLMGAVSGANDIISGKSSLDTLGIKAESDTEFTVTLAQPTPYFKFLLSEPV
CCCCCCCEEEEEEECCCCCHHHCCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHCCCC
YYPLDQKVVDKYGKQYGTSSDKTVYNGPFMFKSDKAWTGTNKNFSIYANPNYYDKSAVKS
CCCCCHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCCCCHHHHHC
KQIDFQVISNANTGAQLYKQGKLDFTLLSTTDLINANKKTEGYTVFKQARTDYIEYNQSG
CCCEEEEECCCCCCHHHHHCCCCEEEEEECHHHHCCCCCCCCEEHHHHHCCHHEEECCCC
KNASSPDAQKALANQDIRQALNLATNRAEVVKTALPGSTAATSFTPVGMSKTSTGEDFAT
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
YAKQDYSYDPTKAKELWAKGLKELGLTKLSLSLEAAGDLAPSEATANFLQTAYQQNLPGL
HHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
TVNLKLVPFKQRLNDAQNGNFDMVLSGWGGDYAEPSTFLQLFTTGQSYNDGKFSSKTYDD
EEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHH
AFKAATTTPDVLEPAKVDEHYKAAEAALYEGSYINPIDFQANPALMNPKITGLEFHSTGL
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEECCCC
AYDLKSAYIK
EEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]