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The map label for this gene is ybaK [C]

Identifier: 125623204

GI number: 125623204

Start: 321464

End: 321940

Strand: Reverse

Name: ybaK [C]

Synonym: llmg_0333

Alternate gene names: 125623204

Gene position: 321940-321464 (Counterclockwise)

Preceding gene: 125623205

Following gene: 125623203

Centisome position: 12.73

GC content: 35.85

Gene sequence:

>477_bases
ATGTCTAAAAAGCAAAAATTAAAGAAAACACTTGTAGAACAAATTCTTGATAAGGCGAAAATTGAGCATACTGGACTTGC
CATCAATGCTTTGGAAAGTAATAGCCTTCCTGACGATATTAATCGTAGTGATATCTATAAAACACTCGCATTGATTGGAG
ATAAAACAGGACCTGTCATTGGTATTCTTCCTTTGACAGAGCATCTGTCAGAAAAAAAATTAGCAAAAGTTTCGGGCAAC
AAAAAAGTAAGTATGATTCCTCAAAAAGACCTACAAAAAACCACGGGTTATATTCACGGGGCAAATAATCCCGTAGGCAT
TTGGCAAAATAAAAAGTTTCCAATTTATATTGATTCCATTGCTTTGGAACATGACTTTATTGTCTGTTCCGCGGGTGAAG
TTGGACGTAGTATAAAAGTTGCTCCCCAAGAACTAGCAGATTTTGTCCATGCTCACTTTGTTGAAATCAGAGAATAA

Upstream 100 bases:

>100_bases
AAAAATTCCCTAAACTTTTTATCCATAGTAATTACTAATAAACCTGTCAGTAAAATTATTATATCTTGTCAGTCAGAACA
AAATCTTCTATAATATAGCT

Downstream 100 bases:

>100_bases
AAATACTGACAGAAATTCTGTCAGTATTTTTTGTATATTTGGAGCAAGAGTTTGCAAAAATTCTTCTTTTTTAGTATATT
TTATTTTATACATAAAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPDDINRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGN
KKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIYIDSIALEHDFIVCSAGEVGRSIKVAPQELADFVHAHFVEIRE

Sequences:

>Translated_158_residues
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPDDINRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGN
KKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIYIDSIALEHDFIVCSAGEVGRSIKVAPQELADFVHAHFVEIRE
>Mature_157_residues
SKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPDDINRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGNK
KVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIYIDSIALEHDFIVCSAGEVGRSIKVAPQELADFVHAHFVEIRE

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=119, Percent_Identity=36.9747899159664, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17493; Mature: 17361

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPDDINRSDIYKTLALIGDKTGPVI
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
GILPLTEHLSEKKLAKVSGNKKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIYIDSI
EEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCEECCCCCCCCEEEEEE
ALEHDFIVCSAGEVGRSIKVAPQELADFVHAHFVEIRE
EEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPDDINRSDIYKTLALIGDKTGPVI
CHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
GILPLTEHLSEKKLAKVSGNKKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIYIDSI
EEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCEECCCCCCCCEEEEEE
ALEHDFIVCSAGEVGRSIKVAPQELADFVHAHFVEIRE
EEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]