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The map label for this gene is dinF [H]

Identifier: 125623056

GI number: 125623056

Start: 169436

End: 170776

Strand: Reverse

Name: dinF [H]

Synonym: llmg_0178

Alternate gene names: 125623056

Gene position: 170776-169436 (Counterclockwise)

Preceding gene: 125623057

Following gene: 125623045

Centisome position: 6.75

GC content: 40.94

Gene sequence:

>1341_bases
ATGAAAGATCTAACAAAAGGAAATATCTTAACAGGACTCATTGCGTTCACTTTACCTTTACTCATGGGTAACTTTTTTCA
AGTCCTCTATAACACGGCAGATACACTCATTGTCGGACAGACATTAGGAAAAGATGCGCTAGCTTCTGTTGGAGCGACTG
GCTCCATCAACTTTTTAATTGTCGGTTTTGCTCAAGGAATGACAGCGGGCCTAACCATTTTAACAGCTCAGCGTTTTGGG
GCGAAAGATAAACTGGCCATCAAAAAATCATATGTGACCGGTCTTTATTTTACCGTTGCCGTTTCTATCATACTTAGCAT
TTTATCACTTATATTTGTTGGACCTCTTTTGCAAGCTATGCAAACGCCAAGCCAAATTTTTGAGGGTGCCAAAACTTTCC
TAAGCATCATGTTGGGTGGGATGATTGCCACTAATCTCTATGCCTACCTCTCTAATGCTCTTCGGGCTTTAGGCGATTCA
AAAACGCCTTTATATGCCTTAATTGCTGCCTCAATTTTAAATATTGCTTTTGAATATTTTGCGATATTAGTTTTGAAATT
AGGAATCGCAGGAGCAAGTGGAGCGACAATCTTGGCCCAAATGATTTCTGTTTTATTCCTTTTTTGGCACATTAGAAGAA
AAGTTCCTGAATTTCAAATCAGTAAAAATTTATGGCAGTTGGACCGGGCAGAAATTGCTCACCATGCTAGACTCGGGATT
CCAATGGGATTCCAATCAAGCATCATTGCAATTGGCTCTATCACACTGCAAGTTGCCTTAAATAAAATGGGAACCAATGC
GGTGGCTACACAGGCAATTGTTTCAAAAATTGACCAATTTGCTATGCTTCCGATGATTTCAATCGGGCTTGCCATGGCTA
CTTTCGGCGCACAAAACTATGGAGCCAAACAATACAAACGGATTAATCAGGGCTTGATGCGCGCCCTTGCCATTGCGGTT
GGTTGGTCCATTGTCTTTGCAATTATCTTGAATCTGGCGCATTTCTATTTCACAACGGCCTTTATCTCAAGTAGCCAAAC
GGCTGTTATCGAGATGTCCAGTCATTATTATCTGGTCAATGGTAGTTTTTATTGGCTCTTAGCAATTTTATTTGTCACAC
GCTCAACCATTCAAGGTCTTGGAAATGCGAAAATCCCAACACTCTGTGGCTTTGCTGAGCTATTTATGCGGGCCGGTGTC
GCAATTATCGGGGTACTTTTGCTGAACTATACGGTAATCATTTCAAGTAATCCTGCCGCTTGGCTTGGCTCGACATCCAT
TTTAATTCCAACCACCATTCGTATGATTAAACGTTTTAGACAAAACCAAGATTTAGCATAA

Upstream 100 bases:

>100_bases
AAGCCTTAACAAAAAAATGCTTTTTTTAAAGAAATAGCCTTGTAAAAACAAGTAAAATGGGCTAAAATAAAGGAATCAAT
TTAGTTTATTTAGGGAAAAA

Downstream 100 bases:

>100_bases
AACCGTCTCTAAGACGGTTTTTTTATTTTACTGACAGTTTTTTAGCAAATAAGCCATCAGTAATTTTTACTGATAAGCTT
TTGGCAAAATAAACTGATCA

Product: damage-inducible protein DinF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKDLTKGNILTGLIAFTLPLLMGNFFQVLYNTADTLIVGQTLGKDALASVGATGSINFLIVGFAQGMTAGLTILTAQRFG
AKDKLAIKKSYVTGLYFTVAVSIILSILSLIFVGPLLQAMQTPSQIFEGAKTFLSIMLGGMIATNLYAYLSNALRALGDS
KTPLYALIAASILNIAFEYFAILVLKLGIAGASGATILAQMISVLFLFWHIRRKVPEFQISKNLWQLDRAEIAHHARLGI
PMGFQSSIIAIGSITLQVALNKMGTNAVATQAIVSKIDQFAMLPMISIGLAMATFGAQNYGAKQYKRINQGLMRALAIAV
GWSIVFAIILNLAHFYFTTAFISSSQTAVIEMSSHYYLVNGSFYWLLAILFVTRSTIQGLGNAKIPTLCGFAELFMRAGV
AIIGVLLLNYTVIISSNPAAWLGSTSILIPTTIRMIKRFRQNQDLA

Sequences:

>Translated_446_residues
MKDLTKGNILTGLIAFTLPLLMGNFFQVLYNTADTLIVGQTLGKDALASVGATGSINFLIVGFAQGMTAGLTILTAQRFG
AKDKLAIKKSYVTGLYFTVAVSIILSILSLIFVGPLLQAMQTPSQIFEGAKTFLSIMLGGMIATNLYAYLSNALRALGDS
KTPLYALIAASILNIAFEYFAILVLKLGIAGASGATILAQMISVLFLFWHIRRKVPEFQISKNLWQLDRAEIAHHARLGI
PMGFQSSIIAIGSITLQVALNKMGTNAVATQAIVSKIDQFAMLPMISIGLAMATFGAQNYGAKQYKRINQGLMRALAIAV
GWSIVFAIILNLAHFYFTTAFISSSQTAVIEMSSHYYLVNGSFYWLLAILFVTRSTIQGLGNAKIPTLCGFAELFMRAGV
AIIGVLLLNYTVIISSNPAAWLGSTSILIPTTIRMIKRFRQNQDLA
>Mature_446_residues
MKDLTKGNILTGLIAFTLPLLMGNFFQVLYNTADTLIVGQTLGKDALASVGATGSINFLIVGFAQGMTAGLTILTAQRFG
AKDKLAIKKSYVTGLYFTVAVSIILSILSLIFVGPLLQAMQTPSQIFEGAKTFLSIMLGGMIATNLYAYLSNALRALGDS
KTPLYALIAASILNIAFEYFAILVLKLGIAGASGATILAQMISVLFLFWHIRRKVPEFQISKNLWQLDRAEIAHHARLGI
PMGFQSSIIAIGSITLQVALNKMGTNAVATQAIVSKIDQFAMLPMISIGLAMATFGAQNYGAKQYKRINQGLMRALAIAV
GWSIVFAIILNLAHFYFTTAFISSSQTAVIEMSSHYYLVNGSFYWLLAILFVTRSTIQGLGNAKIPTLCGFAELFMRAGV
AIIGVLLLNYTVIISSNPAAWLGSTSILIPTTIRMIKRFRQNQDLA

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR015522 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 48199; Mature: 48199

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLTKGNILTGLIAFTLPLLMGNFFQVLYNTADTLIVGQTLGKDALASVGATGSINFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCEEEE
VGFAQGMTAGLTILTAQRFGAKDKLAIKKSYVTGLYFTVAVSIILSILSLIFVGPLLQAM
EEECCCHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTPSQIFEGAKTFLSIMLGGMIATNLYAYLSNALRALGDSKTPLYALIAASILNIAFEYF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AILVLKLGIAGASGATILAQMISVLFLFWHIRRKVPEFQISKNLWQLDRAEIAHHARLGI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PMGFQSSIIAIGSITLQVALNKMGTNAVATQAIVSKIDQFAMLPMISIGLAMATFGAQNY
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAKQYKRINQGLMRALAIAVGWSIVFAIILNLAHFYFTTAFISSSQTAVIEMSSHYYLVN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEC
GSFYWLLAILFVTRSTIQGLGNAKIPTLCGFAELFMRAGVAIIGVLLLNYTVIISSNPAA
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCH
WLGSTSILIPTTIRMIKRFRQNQDLA
HHCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKDLTKGNILTGLIAFTLPLLMGNFFQVLYNTADTLIVGQTLGKDALASVGATGSINFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCEEEE
VGFAQGMTAGLTILTAQRFGAKDKLAIKKSYVTGLYFTVAVSIILSILSLIFVGPLLQAM
EEECCCHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTPSQIFEGAKTFLSIMLGGMIATNLYAYLSNALRALGDSKTPLYALIAASILNIAFEYF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AILVLKLGIAGASGATILAQMISVLFLFWHIRRKVPEFQISKNLWQLDRAEIAHHARLGI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PMGFQSSIIAIGSITLQVALNKMGTNAVATQAIVSKIDQFAMLPMISIGLAMATFGAQNY
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAKQYKRINQGLMRALAIAVGWSIVFAIILNLAHFYFTTAFISSSQTAVIEMSSHYYLVN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEC
GSFYWLLAILFVTRSTIQGLGNAKIPTLCGFAELFMRAGVAIIGVLLLNYTVIISSNPAA
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCH
WLGSTSILIPTTIRMIKRFRQNQDLA
HHCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]