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The map label for this gene is rmaD [H]

Identifier: 125622999

GI number: 125622999

Start: 113679

End: 114197

Strand: Reverse

Name: rmaD [H]

Synonym: llmg_0120

Alternate gene names: 125622999

Gene position: 114197-113679 (Counterclockwise)

Preceding gene: 125623002

Following gene: 125622993

Centisome position: 4.51

GC content: 32.95

Gene sequence:

>519_bases
ATGGATAAAATGAACTCAGCAAACTTGGACAAAAAAATTTCAAAGGAATTGCATGAACTGCGTCATGCAACTGACAATCG
CTCTCAAGAAAGAAAATGGATTTTAGAGCAATTAAATGATGACAAACTAGAAAAAGAAGTTTTGACTCTGTCAGTGGTGG
CTCTTCACATTTTATCCGCCCTAACCAAAAAAGATTTAACTGGTATTGAATTAGCCACAAAATTATCAGTCACTCGTGGG
GGAGTGACCCGTGCTGTTCAAAATTTAATAAAACATCAGTTTCTAACAACTTATCAAGCGGATAATGATAAAAAGAAAAT
TTACTACCATATCACAACTAAAGGCTTAAAAGTGGCAAGTATCCATGATAAGATGCACAAAATCATGGATTTAAAGCTTG
GACAAATTTTTGATAAATACAACGAAAATGACAAATCAATCATTTTAAATTTTCTGTCTGATTTCAATCTAACAGAAGGA
CAAATTTTTGATTCGACGCAGACTGATAAAAAACTCTAG

Upstream 100 bases:

>100_bases
CTTTAAAGTGGTTTTGCAAACCATCATCGGTCTTCTTTGGTCAGCCAAAATCAGCCCTAGGAAATCTATTTCGTATGGCT
GGCTGTGATATAATATAAGA

Downstream 100 bases:

>100_bases
CAAAATATTTTGCTAGAGTTTTTTATTTTTTTATTTTGCTTCGTAATGAAAATCAGGGTTTAATTCTTTATCAAGTTCAG
CAAAAGCAACTTCCATTCGG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDKMNSANLDKKISKELHELRHATDNRSQERKWILEQLNDDKLEKEVLTLSVVALHILSALTKKDLTGIELATKLSVTRG
GVTRAVQNLIKHQFLTTYQADNDKKKIYYHITTKGLKVASIHDKMHKIMDLKLGQIFDKYNENDKSIILNFLSDFNLTEG
QIFDSTQTDKKL

Sequences:

>Translated_172_residues
MDKMNSANLDKKISKELHELRHATDNRSQERKWILEQLNDDKLEKEVLTLSVVALHILSALTKKDLTGIELATKLSVTRG
GVTRAVQNLIKHQFLTTYQADNDKKKIYYHITTKGLKVASIHDKMHKIMDLKLGQIFDKYNENDKSIILNFLSDFNLTEG
QIFDSTQTDKKL
>Mature_172_residues
MDKMNSANLDKKISKELHELRHATDNRSQERKWILEQLNDDKLEKEVLTLSVVALHILSALTKKDLTGIELATKLSVTRG
GVTRAVQNLIKHQFLTTYQADNDKKKIYYHITTKGLKVASIHDKMHKIMDLKLGQIFDKYNENDKSIILNFLSDFNLTEG
QIFDSTQTDKKL

Specific function: Involved in protein secretion [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19826; Mature: 19826

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKMNSANLDKKISKELHELRHATDNRSQERKWILEQLNDDKLEKEVLTLSVVALHILSA
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LTKKDLTGIELATKLSVTRGGVTRAVQNLIKHQFLTTYQADNDKKKIYYHITTKGLKVAS
HHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEHH
IHDKMHKIMDLKLGQIFDKYNENDKSIILNFLSDFNLTEGQIFDSTQTDKKL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure
MDKMNSANLDKKISKELHELRHATDNRSQERKWILEQLNDDKLEKEVLTLSVVALHILSA
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LTKKDLTGIELATKLSVTRGGVTRAVQNLIKHQFLTTYQADNDKKKIYYHITTKGLKVAS
HHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEHH
IHDKMHKIMDLKLGQIFDKYNENDKSIILNFLSDFNLTEGQIFDSTQTDKKL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]