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The map label for this gene is cshA [H]

Identifier: 125622982

GI number: 125622982

Start: 97150

End: 98409

Strand: Reverse

Name: cshA [H]

Synonym: llmg_0103

Alternate gene names: 125622982

Gene position: 98409-97150 (Counterclockwise)

Preceding gene: 125622983

Following gene: 125622981

Centisome position: 3.89

GC content: 38.89

Gene sequence:

>1260_bases
ATGGTACAAAATCTTGCAAGACGAATGAGACCTCGCAATATCGATGAAATTGTTGGTCAAAGACATTTAGTCGGTAAAGG
AAAAATCATCCGCAGAATGGTGGAAACTCAACTTCTTTCAAGTATGATTCTCTATGGCCCTCCAGGCATCGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACCATGAACATTGCTTTTAGAACATTTAATGCAACAACTGATACTAAAAAAAGGCTC
CAAGAAATTGCTTCCGAAGCAGAATTTTCTGGTCAACTTGTTTTACTTCTTGATGAAATCCATCGTTTAGATAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATATTAATTGGAGCAACGACCGAAAATCCCTATTTTTCAG
TCGTACCTGCCATTCGCTCTCGTGTTCAAATTTTTGAACTGAAAGCTCTTGAACCAGAGGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGAGGCTTTGATTTTGATGTGACTATTGAAGATGATGCGCTCTATTTCTTAGTTCACTC
AACCAATGGAGACTTACGTTCTACATTTAATGCCTTAGAATTAGCTGTTCTTTCTTCAAACGAACACCGCGTTACCCTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCAGCAACTTTTGATAAGGATGGGGATGCTCACTACGATTTGCTGTCTGCT
CTGCAAAAATCTATTCGTGGGTCTGATGTCAATGCAAGTTTACACTATGCTGCACGTTTGATTGAGGGAGGGGATTTACA
AAGCCTAGCACGTCGTTTGACTGTCATGGCCTATGAAGATATTGGTTTAGCCAATCCCGATGCTGCAGTACATACCGTTA
CAGCCTTATCAGCAGCTGAGAAATTAGGGTTCCCAGAAGCACGGATTCCTCTTGCCAATATCATTATTGATTTGGCCTTA
TCTCCAAAATCAAACTCAGCTTATTTAGCAATGGACGAAGCCCTTTCGGACTTGGGAAAATATGGAAATCTTGCTGTGCC
ACCGCATTTACAAGATGGTCATTACGCCGGAGCTAAAGAATTAGGACGGTCTGTAGAATATCAATATGCTCATAATTTTC
CAGACCACTGGGTAAATCAACAATATTTACCCGATAAAATTAAAAATGCAGATTACTTCCGACCGGATGATATGGGAAGA
TATGAAAAAGCCCTCCATAGTCGGAAAGAATGGATTAATGAACAAAAAAAGAGGAGCTGA

Upstream 100 bases:

>100_bases
GGAGATTATGTTGATGACTGCTTCTTAGCTTTTTATCTTGATAAAAGCCTCATGTAAATTTGGTTTACACCACTTGTAAA
CTTATTGATTGGAGAATGAT

Downstream 100 bases:

>100_bases
CAAATCTGTCAGTAAATATAAAGTCTTAACATTTACTGACAGAAAGTGAAAAAGATGACAGAAGAAATCACTCAACTCAA
ATTATCAACAATTGTCAAAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNIAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKELGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWINEQKKRS

Sequences:

>Translated_419_residues
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNIAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKELGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWINEQKKRS
>Mature_419_residues
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNIAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKELGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWINEQKKRS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=36.0091743119266, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI18426904, Length=418, Percent_Identity=32.5358851674641, Blast_Score=198, Evalue=6e-51,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=36.5967365967366, Blast_Score=265, Evalue=4e-72,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=34.4339622641509, Blast_Score=216, Evalue=5e-57,
Organism=Saccharomyces cerevisiae, GI6324039, Length=318, Percent_Identity=26.1006289308176, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46876; Mature: 46876

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIA
CHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GTMNIAFRTFNATTDTKKRLQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQI
HHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHCCCCCE
ILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVNLSLQDKERGFDFDVTIEDDA
EEEEECCCCCCEEEHHHHHHHEEEEEEECCCCCCCEEEEEEEEEHHCCCCCEEEEEECCE
LYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
EEEEEECCCCCHHHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAE
HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
KLGFPEARIPLANIIIDLALSPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKE
HCCCCHHCCCHHHHHEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
LGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGRYEKALHSRKEWINEQKKRS
HCCCCEEHHHCCCCHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIA
CHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
GTMNIAFRTFNATTDTKKRLQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQI
HHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHCCCCCE
ILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVNLSLQDKERGFDFDVTIEDDA
EEEEECCCCCCEEEHHHHHHHEEEEEEECCCCCCCEEEEEEEEEHHCCCCCEEEEEECCE
LYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
EEEEEECCCCCHHHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAE
HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
KLGFPEARIPLANIIIDLALSPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKE
HCCCCHHCCCHHHHHEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
LGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGRYEKALHSRKEWINEQKKRS
HCCCCEEHHHCCCCHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]